Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACIU4M_RS18155 Genome accession   NZ_CP174375
Coordinates   3502194..3503444 (+) Length   416 a.a.
NCBI ID   WP_335352770.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3497194..3508444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS18130 (ACIU4M_18130) ymfI 3498604..3499332 (+) 729 WP_259254278.1 elongation factor P 5-aminopentanone reductase -
  ACIU4M_RS18135 (ACIU4M_18135) - 3499405..3499662 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  ACIU4M_RS18140 (ACIU4M_18140) - 3499794..3500585 (+) 792 WP_039166619.1 DUF3388 domain-containing protein -
  ACIU4M_RS18145 (ACIU4M_18145) - 3500609..3501520 (+) 912 WP_335352771.1 helix-turn-helix domain-containing protein -
  ACIU4M_RS18150 (ACIU4M_18150) pgsA 3501596..3502177 (+) 582 WP_070325845.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACIU4M_RS18155 (ACIU4M_18155) cinA 3502194..3503444 (+) 1251 WP_335352770.1 competence/damage-inducible protein A Machinery gene
  ACIU4M_RS18160 (ACIU4M_18160) recA 3503622..3504665 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  ACIU4M_RS18165 (ACIU4M_18165) rny 3504966..3506528 (+) 1563 WP_003211958.1 ribonuclease Y -
  ACIU4M_RS18170 (ACIU4M_18170) - 3506618..3507412 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  ACIU4M_RS18175 (ACIU4M_18175) spoVS 3507615..3507875 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45628.76 Da        Isoelectric Point: 4.8624

>NTDB_id=1077005 ACIU4M_RS18155 WP_335352770.1 3502194..3503444(+) (cinA) [Bacillus altitudinis strain SF5]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEESDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CRAETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKDS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1077005 ACIU4M_RS18155 WP_335352770.1 3502194..3503444(+) (cinA) [Bacillus altitudinis strain SF5]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGAATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGTGAGTACTTCTACGGATATGGTGATACATCTCTGGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGCAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCCGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGATAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.638

99.519

0.743
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus mutans UA159

47.912

97.837

0.469
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment