Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACCH06_RS09325 Genome accession   NZ_CP174157
Coordinates   1846425..1847675 (+) Length   416 a.a.
NCBI ID   WP_406590070.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1841425..1852675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS09295 yfmH 1841508..1842794 (+) 1287 WP_061670800.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACCH06_RS09300 ymfI 1842851..1843579 (+) 729 WP_406590068.1 elongation factor P 5-aminopentanone reductase -
  ACCH06_RS09305 - 1843660..1843917 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  ACCH06_RS09310 - 1844047..1844838 (+) 792 WP_406590069.1 DUF3388 domain-containing protein -
  ACCH06_RS09315 - 1844857..1845774 (+) 918 WP_010788648.1 RodZ family helix-turn-helix domain-containing protein -
  ACCH06_RS09320 pgsA 1845825..1846406 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACCH06_RS09325 cinA 1846425..1847675 (+) 1251 WP_406590070.1 competence/damage-inducible protein A Machinery gene
  ACCH06_RS09330 recA 1847847..1848890 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  ACCH06_RS09335 - 1849176..1850405 (+) 1230 WP_406590071.1 serine hydrolase domain-containing protein -
  ACCH06_RS09340 rny 1850664..1852226 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45157.41 Da        Isoelectric Point: 4.8535

>NTDB_id=1074672 ACCH06_RS09325 WP_406590070.1 1846425..1847675(+) (cinA) [Bacillus atrophaeus strain SHZ-24]
MELGKKAEIIAVGSELLLGQISNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIASVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1074672 ACCH06_RS09325 WP_406590070.1 1846425..1847675(+) (cinA) [Bacillus atrophaeus strain SHZ-24]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCTCCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGATAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAGTGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTAGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCAGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGCTATGATGATACATCTCTTGTTAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCAGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

88.942

100

0.889
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment