Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACAM22_RS08230 Genome accession   NZ_AP028929
Coordinates   1793497..1795485 (-) Length   662 a.a.
NCBI ID   WP_369606672.1    Uniprot ID   A0AAT9G2K7
Organism   Streptococcus sp. SN-1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788497..1800485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS08210 (MASAN616_15950) amiF 1788995..1789921 (-) 927 WP_070842265.1 ATP-binding cassette domain-containing protein Regulator
  ACAM22_RS08215 (MASAN616_15960) amiE 1789932..1790999 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACAM22_RS08220 (MASAN616_15970) amiD 1791008..1791934 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACAM22_RS08225 (MASAN616_15980) amiC 1791934..1793430 (-) 1497 WP_000759914.1 ABC transporter permease Regulator
  ACAM22_RS08230 (MASAN616_15990) amiA3 1793497..1795485 (-) 1989 WP_369606672.1 peptide ABC transporter substrate-binding protein Regulator
  ACAM22_RS08240 (MASAN616_16000) - 1795914..1797245 (-) 1332 WP_369606673.1 hemolysin family protein -
  ACAM22_RS08245 (MASAN616_16010) endA 1797400..1798224 (-) 825 WP_153226562.1 DNA-entry nuclease EndA Machinery gene
  ACAM22_RS08250 (MASAN616_16020) - 1798263..1798451 (-) 189 WP_025171934.1 DNA-directed RNA polymerase subunit beta -
  ACAM22_RS08255 (MASAN616_16030) murA 1798444..1799727 (-) 1284 WP_000411904.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72471.84 Da        Isoelectric Point: 4.9296

>NTDB_id=107349 ACAM22_RS08230 WP_369606672.1 1793497..1795485(-) (amiA3) [Streptococcus sp. SN-1]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKAVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRASYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVIKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=107349 ACAM22_RS08230 WP_369606672.1 1793497..1795485(-) (amiA3) [Streptococcus sp. SN-1]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACCTTGGATTATATCGTCAGCA
ATATCGATTCAACATCTTTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAACGATAAATATGGTAATCTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTAAGGATGCTAAATGGGTAAC
TGCAGAGGGAGAAGAGTACGCTCCTGTCACTGCTAAAGACTTCGTTACTGGTTTGAAACATGCTGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAAGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCGCTTGATGATCAAACATTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACAACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACCGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTGAAGGCTGTAACTCCTAAATCATCTATCGAGATGGCTAAAAATGACGCTTATTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCTAAAGGTTT
TGCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTTAAAGATA
ACATTTACTTTAATGAACCAGGTGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAACCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAGAAAGCATTGCTAAATAAGGAATTCCGTCAAGCCTTGAACTTTGCAGT
GGACCGTGCTTCTTATTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCTATCCGTAATACGTTTGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCAGATTCTCAAAATGGACTTTACAATGAAGAAAAAGCTAAAGAAGTCTTTGCTAAAGCTAAATCAAGCTT
GCAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAACAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCATTAAGGGAGGAAGCACTCGCCTTTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATATGCGGTGGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCAGTGGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATTACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.669

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.367

100

0.545
  amiA Streptococcus salivarius strain HSISS4

53.765

100

0.539

Multiple sequence alignment