Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACAM22_RS08220 Genome accession   NZ_AP028929
Coordinates   1791008..1791934 (-) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus sp. SN-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786008..1796934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS08200 (MASAN616_15930) - 1786661..1787554 (-) 894 WP_125422242.1 ABC transporter permease -
  ACAM22_RS08205 (MASAN616_15940) - 1787566..1788543 (-) 978 WP_000869838.1 ABC transporter substrate-binding protein -
  ACAM22_RS08210 (MASAN616_15950) amiF 1788995..1789921 (-) 927 WP_070842265.1 ATP-binding cassette domain-containing protein Regulator
  ACAM22_RS08215 (MASAN616_15960) amiE 1789932..1790999 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACAM22_RS08220 (MASAN616_15970) amiD 1791008..1791934 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACAM22_RS08225 (MASAN616_15980) amiC 1791934..1793430 (-) 1497 WP_000759914.1 ABC transporter permease Regulator
  ACAM22_RS08230 (MASAN616_15990) amiA3 1793497..1795485 (-) 1989 WP_369606672.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=107347 ACAM22_RS08220 WP_000103691.1 1791008..1791934(-) (amiD) [Streptococcus sp. SN-1]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=107347 ACAM22_RS08220 WP_000103691.1 1791008..1791934(-) (amiD) [Streptococcus sp. SN-1]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCATA
TTCTTACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTTATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATTTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAATGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTAGTTATCGGTGTCTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTAGACCGTGTGATGATGGAAGTTTACAACGTCATCTCAAATATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTAACAACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACGCCAACATTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACGATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCTTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment