Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACAM22_RS08210 Genome accession   NZ_AP028929
Coordinates   1788995..1789921 (-) Length   308 a.a.
NCBI ID   WP_070842265.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783995..1794921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS08190 (MASAN616_15910) - 1784407..1785150 (-) 744 WP_261052510.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ACAM22_RS08195 (MASAN616_15920) - 1785845..1786648 (-) 804 WP_369606671.1 ABC transporter ATP-binding protein -
  ACAM22_RS08200 (MASAN616_15930) - 1786661..1787554 (-) 894 WP_125422242.1 ABC transporter permease -
  ACAM22_RS08205 (MASAN616_15940) - 1787566..1788543 (-) 978 WP_000869838.1 ABC transporter substrate-binding protein -
  ACAM22_RS08210 (MASAN616_15950) amiF 1788995..1789921 (-) 927 WP_070842265.1 ATP-binding cassette domain-containing protein Regulator
  ACAM22_RS08215 (MASAN616_15960) amiE 1789932..1790999 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ACAM22_RS08220 (MASAN616_15970) amiD 1791008..1791934 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACAM22_RS08225 (MASAN616_15980) amiC 1791934..1793430 (-) 1497 WP_000759914.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.81 Da        Isoelectric Point: 6.4025

>NTDB_id=107345 ACAM22_RS08210 WP_070842265.1 1788995..1789921(-) (amiF) [Streptococcus sp. SN-1]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=107345 ACAM22_RS08210 WP_070842265.1 1788995..1789921(-) (amiF) [Streptococcus sp. SN-1]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAATAAGGGAGAAACGTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCTGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAGGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGCGCCTTGGTGATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
CCAAGTCTTAAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGTTTGACCTATCTCTTCATTGCCCATGACTTGTCGGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCTGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTATT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCCATGGTAGAAATCCGTCCAGGTCATTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment