Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI51W_RS08165 Genome accession   NZ_CP173616
Coordinates   1163712..1164920 (+) Length   402 a.a.
NCBI ID   WP_405126220.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain M13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1158712..1169920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI51W_RS08140 (ACI51W_08135) nadC 1160155..1161003 (+) 849 WP_027604881.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACI51W_RS08145 (ACI51W_08140) - 1161086..1161391 (-) 306 WP_027604882.1 DUF6388 family protein -
  ACI51W_RS08155 (ACI51W_08150) - 1161663..1163063 (-) 1401 WP_027604883.1 O-antigen ligase -
  ACI51W_RS08160 (ACI51W_08155) - 1163099..1163509 (-) 411 WP_027604884.1 pilin -
  ACI51W_RS08165 (ACI51W_08160) pilC 1163712..1164920 (+) 1209 WP_405126220.1 type II secretion system F family protein Machinery gene
  ACI51W_RS08170 (ACI51W_08165) pilD 1164917..1165783 (+) 867 WP_169899146.1 A24 family peptidase Machinery gene
  ACI51W_RS08175 (ACI51W_08170) coaE 1165780..1166403 (+) 624 WP_027604887.1 dephospho-CoA kinase -
  ACI51W_RS08180 (ACI51W_08175) yacG 1166400..1166600 (+) 201 WP_027604888.1 DNA gyrase inhibitor YacG -
  ACI51W_RS08185 (ACI51W_08180) - 1166597..1166812 (-) 216 WP_003171680.1 hypothetical protein -
  ACI51W_RS08190 (ACI51W_08185) - 1166888..1167577 (-) 690 WP_169899148.1 energy-coupling factor ABC transporter permease -
  ACI51W_RS08195 (ACI51W_08190) - 1167574..1168041 (-) 468 WP_169899150.1 FAD/FMN-containing dehydrogenase -
  ACI51W_RS08200 (ACI51W_08195) - 1168147..1168776 (+) 630 WP_027604891.1 DUF1780 domain-containing protein -
  ACI51W_RS08205 (ACI51W_08200) - 1168830..1169003 (+) 174 WP_016976295.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43262.44 Da        Isoelectric Point: 9.8493

>NTDB_id=1073202 ACI51W_RS08165 WP_405126220.1 1163712..1164920(+) (pilC) [Pseudomonas marginalis strain M13]
MDNASTTYAWEGINRKGRRVSGQTKGHNAALVKAQLRQQGISPGRVRKQSPLLPSLTPSVKAADITLFTRQLATLLKAGV
PLLQAFDIICEGVDNRAVREQVLGLKQAIAAGSSLAEALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPIAVLVVASLVTGILLVHVVPQFQALFAGVDGKLPAFTLHVIALSAFMQHAWWMLVLGIVAGAAGLRQAY
RASSSFRYWLDTGLLKAPLAGKLLTKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGNDPFKQAIEHMRHDVSNGMQLN
QSMLNSGLFPGMAIQLTAIGEESGTLEHMLEKVASHYETDVDNQVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1073202 ACI51W_RS08165 WP_405126220.1 1163712..1164920(+) (pilC) [Pseudomonas marginalis strain M13]
ATGGACAACGCTTCAACGACTTACGCCTGGGAAGGCATCAACCGCAAAGGGCGCAGGGTGTCCGGGCAAACCAAGGGGCA
CAACGCAGCCCTGGTCAAGGCACAACTGCGCCAGCAAGGGATCAGCCCCGGTCGTGTGCGCAAGCAATCCCCGCTGCTGC
CAAGCCTCACCCCATCAGTCAAAGCGGCTGACATCACGCTGTTCACGCGCCAACTGGCGACGCTGCTGAAGGCTGGGGTT
CCACTCCTGCAAGCCTTCGACATCATCTGCGAAGGCGTCGACAATCGCGCTGTGCGTGAGCAGGTGCTGGGACTTAAACA
GGCGATCGCCGCCGGCAGCAGCCTGGCTGAGGCATTACGCAAACAACCGCGTTATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGGGCGCTTGAGACACTGCTGGAAAGGGTGGCGATCCACCGGGAAAAGAGTGAACAGCTC
AAGGCCAGGATCAAAAAGGCCATGACCTACCCCATTGCTGTCCTGGTGGTTGCCAGCCTGGTCACCGGCATACTGCTGGT
CCACGTGGTACCGCAGTTCCAGGCCCTGTTCGCCGGAGTCGACGGCAAACTGCCGGCATTTACCTTGCACGTGATCGCCC
TGTCGGCGTTCATGCAGCACGCATGGTGGATGCTGGTATTGGGCATAGTCGCGGGAGCCGCTGGGCTGCGCCAGGCCTAT
CGGGCTTCGTCGAGCTTTCGCTACTGGCTGGACACAGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGACAAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTCTCCACGACCTTCGCCGCCGGTGTTCCACTGGTCCAGGCATTGGATTCAGTCG
CCGGCGCCGTGGGAAACGACCCGTTCAAACAGGCAATCGAACATATGCGTCACGATGTATCCAACGGCATGCAACTGAAT
CAATCCATGCTCAACAGCGGCCTGTTTCCCGGCATGGCGATCCAACTGACGGCGATCGGCGAAGAGTCGGGCACCCTGGA
ACACATGCTGGAAAAGGTCGCCAGCCACTATGAGACTGACGTGGACAACCAGGTCGACAACCTCACCAGCCTGATGGAGC
CATTGATCATGGTGGTGCTGGGGGGCATCGTCGGCGCGCTGGTCATCGCCATGTACCTGCCGGTCTTCCAGCTGGGGAGT
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.705

98.756

0.599
  pilC Acinetobacter baumannii D1279779

54.04

98.507

0.532
  pilC Acinetobacter baylyi ADP1

53.418

98.259

0.525
  pilC Legionella pneumophila strain ERS1305867

49.507

100

0.5
  pilC Vibrio cholerae strain A1552

41.397

99.751

0.413
  pilC Vibrio campbellii strain DS40M4

39.848

98.01

0.391
  pilG Neisseria gonorrhoeae MS11

39.108

94.776

0.371
  pilG Neisseria meningitidis 44/76-A

38.583

94.776

0.366

Multiple sequence alignment