Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACI51W_RS08170 | Genome accession | NZ_CP173616 |
| Coordinates | 1164917..1165783 (+) | Length | 288 a.a. |
| NCBI ID | WP_169899146.1 | Uniprot ID | - |
| Organism | Pseudomonas marginalis strain M13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1159917..1170783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI51W_RS08140 (ACI51W_08135) | nadC | 1160155..1161003 (+) | 849 | WP_027604881.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACI51W_RS08145 (ACI51W_08140) | - | 1161086..1161391 (-) | 306 | WP_027604882.1 | DUF6388 family protein | - |
| ACI51W_RS08155 (ACI51W_08150) | - | 1161663..1163063 (-) | 1401 | WP_027604883.1 | O-antigen ligase | - |
| ACI51W_RS08160 (ACI51W_08155) | - | 1163099..1163509 (-) | 411 | WP_027604884.1 | pilin | - |
| ACI51W_RS08165 (ACI51W_08160) | pilC | 1163712..1164920 (+) | 1209 | WP_405126220.1 | type II secretion system F family protein | Machinery gene |
| ACI51W_RS08170 (ACI51W_08165) | pilD | 1164917..1165783 (+) | 867 | WP_169899146.1 | A24 family peptidase | Machinery gene |
| ACI51W_RS08175 (ACI51W_08170) | coaE | 1165780..1166403 (+) | 624 | WP_027604887.1 | dephospho-CoA kinase | - |
| ACI51W_RS08180 (ACI51W_08175) | yacG | 1166400..1166600 (+) | 201 | WP_027604888.1 | DNA gyrase inhibitor YacG | - |
| ACI51W_RS08185 (ACI51W_08180) | - | 1166597..1166812 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| ACI51W_RS08190 (ACI51W_08185) | - | 1166888..1167577 (-) | 690 | WP_169899148.1 | energy-coupling factor ABC transporter permease | - |
| ACI51W_RS08195 (ACI51W_08190) | - | 1167574..1168041 (-) | 468 | WP_169899150.1 | FAD/FMN-containing dehydrogenase | - |
| ACI51W_RS08200 (ACI51W_08195) | - | 1168147..1168776 (+) | 630 | WP_027604891.1 | DUF1780 domain-containing protein | - |
| ACI51W_RS08205 (ACI51W_08200) | - | 1168830..1169003 (+) | 174 | WP_016976295.1 | DUF3094 family protein | - |
| ACI51W_RS08210 (ACI51W_08205) | - | 1169064..1170362 (+) | 1299 | WP_027604892.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31881.02 Da Isoelectric Point: 7.4318
>NTDB_id=1073203 ACI51W_RS08170 WP_169899146.1 1164917..1165783(+) (pilD) [Pseudomonas marginalis strain M13]
MSLLLNEHPLAFVTIALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPGGPTYNLMHPNSCCPHCDHPIRPW
ENIPLLSYLMLRGRCAHCQGAISPRYPFTELACGLISAWVAWHFGFGWQAAAVLVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSFGLLTTLPDALWGTVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKTLASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
MSLLLNEHPLAFVTIALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPGGPTYNLMHPNSCCPHCDHPIRPW
ENIPLLSYLMLRGRCAHCQGAISPRYPFTELACGLISAWVAWHFGFGWQAAAVLVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSFGLLTTLPDALWGTVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKTLASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=1073203 ACI51W_RS08170 WP_169899146.1 1164917..1165783(+) (pilD) [Pseudomonas marginalis strain M13]
TTGAGCCTGCTGCTGAACGAGCACCCATTGGCCTTTGTCACCATCGCGCTGTTACTGGGGCTGATCGTCGGCAGTTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGTGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCTGGCGGGCCGACCTACAACCTGATGCACCCCAACTCATGCTGCCCACACTGTGACCATCCCATCCGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGATGCTCAGGGGGCGCTGCGCCCATTGCCAGGGAGCCATCAGCCCCCGCTACCC
TTTCACGGAACTCGCCTGTGGGTTGATCTCGGCCTGGGTTGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAGCGGTGC
TGGTGTTGAGTTGGGGGTTGCTGGCAATGAGCCTGATCGACGCAGACCACCAGTTGCTGCCTGATGTGCTGGTGCTGCCA
TTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGATTACTGACGACATTACCCGACGCACTATGGGGCACCGTGATCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCACGGTGATTTCAAGT
TACTGGCCTTGCTCGGCGCCTGGGGCGGCTGGCAGATATTGCCGATGACACTGTTGATGTCGTCGCTGGTGGGGGTGTTT
GTCGGGTTGATCCTGATGCGCCTGCGCAAGACCCTGGCGTCCACGCCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCACTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAGCCTGCTGCTGAACGAGCACCCATTGGCCTTTGTCACCATCGCGCTGTTACTGGGGCTGATCGTCGGCAGTTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGTGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCTGGCGGGCCGACCTACAACCTGATGCACCCCAACTCATGCTGCCCACACTGTGACCATCCCATCCGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGATGCTCAGGGGGCGCTGCGCCCATTGCCAGGGAGCCATCAGCCCCCGCTACCC
TTTCACGGAACTCGCCTGTGGGTTGATCTCGGCCTGGGTTGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAGCGGTGC
TGGTGTTGAGTTGGGGGTTGCTGGCAATGAGCCTGATCGACGCAGACCACCAGTTGCTGCCTGATGTGCTGGTGCTGCCA
TTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGATTACTGACGACATTACCCGACGCACTATGGGGCACCGTGATCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCACGGTGATTTCAAGT
TACTGGCCTTGCTCGGCGCCTGGGGCGGCTGGCAGATATTGCCGATGACACTGTTGATGTCGTCGCTGGTGGGGGTGTTT
GTCGGGTTGATCCTGATGCGCCTGCGCAAGACCCTGGCGTCCACGCCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCACTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.333 |
98.958 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
49.296 |
98.611 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
50 |
93.75 |
0.469 |
| pilD | Acinetobacter baumannii D1279779 |
49.084 |
94.792 |
0.465 |
| pilD | Acinetobacter nosocomialis M2 |
49.084 |
94.792 |
0.465 |