Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RE428_RS05060 Genome accession   NZ_AP028878
Coordinates   1112493..1112789 (-) Length   98 a.a.
NCBI ID   WP_004580891.1    Uniprot ID   N6WMG7
Organism   Marinobacter nanhaiticus D15-8W     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107493..1117789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE428_RS05045 (RE428_10140) - 1107767..1109554 (-) 1788 WP_004580888.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  RE428_RS05050 (RE428_10150) gloA 1109953..1110513 (+) 561 WP_004580889.1 lactoylglutathione lyase -
  RE428_RS05055 (RE428_10160) - 1111145..1112101 (-) 957 WP_004580890.1 DMT family transporter -
  RE428_RS05060 (RE428_10170) comEA 1112493..1112789 (-) 297 WP_004580891.1 ComEA family DNA-binding protein Machinery gene
  RE428_RS05065 (RE428_10180) - 1113759..1114778 (-) 1020 WP_004580892.1 2-dehydropantoate 2-reductase -
  RE428_RS05070 (RE428_10190) - 1114918..1115634 (-) 717 WP_004580893.1 GntR family transcriptional regulator -
  RE428_RS05075 (RE428_10200) atzF 1115670..1117508 (-) 1839 WP_004580894.1 allophanate hydrolase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10136.59 Da        Isoelectric Point: 4.6129

>NTDB_id=107254 RE428_RS05060 WP_004580891.1 1112493..1112789(-) (comEA) [Marinobacter nanhaiticus D15-8W]
MKLLISAFFVITTLFSGFALADATAPAEPAATAAAQVNINTADAKTLAKLDGIGESKAQAIIDFRDANGPFASVADLTKV
KGIGERTLEQNQAVITVQ

Nucleotide


Download         Length: 297 bp        

>NTDB_id=107254 RE428_RS05060 WP_004580891.1 1112493..1112789(-) (comEA) [Marinobacter nanhaiticus D15-8W]
ATGAAACTACTGATTAGCGCCTTCTTCGTCATCACCACCCTGTTCTCCGGCTTTGCTTTGGCCGACGCCACTGCACCGGC
CGAACCGGCCGCCACCGCTGCTGCGCAGGTGAATATCAACACGGCAGATGCCAAAACCCTCGCGAAGCTGGATGGTATCG
GCGAATCCAAGGCCCAGGCGATCATCGACTTCCGCGACGCCAACGGCCCTTTCGCGTCCGTTGCAGATCTGACCAAGGTC
AAGGGTATTGGTGAGCGCACCCTGGAGCAGAACCAGGCCGTCATCACCGTTCAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6WMG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

50.526

96.939

0.49
  comEA Vibrio cholerae C6706

50.526

96.939

0.49
  comEA Vibrio parahaemolyticus RIMD 2210633

45.161

94.898

0.429
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.404

100

0.408
  comE1/comEA Haemophilus influenzae Rd KW20

35.514

100

0.388
  comEA Vibrio campbellii strain DS40M4

39.785

94.898

0.378
  comEA Acinetobacter baylyi ADP1

45.679

82.653

0.378

Multiple sequence alignment