Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACI3L8_RS07050 Genome accession   NZ_CP173391
Coordinates   1564792..1565901 (-) Length   369 a.a.
NCBI ID   WP_404972033.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1559792..1570901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS07020 (ACI3L8_07020) hemF 1560320..1561237 (-) 918 WP_045371961.1 oxygen-dependent coproporphyrinogen oxidase -
  ACI3L8_RS07025 (ACI3L8_07025) - 1561272..1561829 (-) 558 WP_182053648.1 L-threonylcarbamoyladenylate synthase -
  ACI3L8_RS07030 (ACI3L8_07030) purE 1562029..1562514 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACI3L8_RS07035 (ACI3L8_07035) - 1562519..1563652 (+) 1134 WP_404972032.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACI3L8_RS07040 (ACI3L8_07040) - 1563717..1564286 (-) 570 WP_005535498.1 type I DNA topoisomerase -
  ACI3L8_RS07045 (ACI3L8_07045) - 1564310..1564789 (-) 480 WP_005429833.1 DUF494 family protein -
  ACI3L8_RS07050 (ACI3L8_07050) dprA 1564792..1565901 (-) 1110 WP_404972033.1 DNA-processing protein DprA Machinery gene
  ACI3L8_RS07055 (ACI3L8_07055) - 1565885..1566979 (-) 1095 WP_404972034.1 LysM peptidoglycan-binding domain-containing protein -
  ACI3L8_RS07060 (ACI3L8_07060) def 1567118..1567636 (+) 519 WP_005450979.1 peptide deformylase -
  ACI3L8_RS07065 (ACI3L8_07065) fmt 1567670..1568617 (+) 948 WP_404972035.1 methionyl-tRNA formyltransferase -
  ACI3L8_RS07070 (ACI3L8_07070) rsmB 1568699..1569982 (+) 1284 WP_005535508.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39394.01 Da        Isoelectric Point: 5.5817

>NTDB_id=1072009 ACI3L8_RS07050 WP_404972033.1 1564792..1565901(-) (dprA) [Vibrio campbellii strain LB3]
MTPQNETDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1072009 ACI3L8_RS07050 WP_404972033.1 1564792..1565901(-) (dprA) [Vibrio campbellii strain LB3]
ATGACACCACAAAATGAGACTGATCTTGCTGCCTGGTTAAAGCTTAGTTGTTTACCTGGCATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACACGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTCACTAGTGGCTTAGCATTGGGTATTGATGGCCATGCTCAT
GATGGTGCGCTGTTAGCTGGAGGTAAAACCATCGCAGTGCTTGGCTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
CGGCTTGGCGCAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGGGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

98.916

100

0.989
  dprA Vibrio cholerae strain A1552

58.108

100

0.583
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.485
  dprA Legionella pneumophila strain ERS1305867

46.809

89.16

0.417
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Neisseria meningitidis strain C311

37.028

100

0.398
  dprA Neisseria meningitidis MC58

37.028

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.132

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.878

100

0.382

Multiple sequence alignment