Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI3L5_RS14240 Genome accession   NZ_CP173389
Coordinates   3149311..3150534 (+) Length   407 a.a.
NCBI ID   WP_404973275.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144311..3155534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS14220 (ACI3L5_14220) ampD 3145345..3145896 (-) 552 WP_050912909.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACI3L5_RS14225 (ACI3L5_14225) nadC 3145989..3146876 (+) 888 WP_399425123.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACI3L5_RS14230 (ACI3L5_14230) pilA 3147142..3147591 (+) 450 WP_399425124.1 pilin Machinery gene
  ACI3L5_RS14235 (ACI3L5_14235) pilB 3147591..3149276 (+) 1686 WP_399425125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI3L5_RS14240 (ACI3L5_14240) pilC 3149311..3150534 (+) 1224 WP_404973275.1 type II secretion system F family protein Machinery gene
  ACI3L5_RS14245 (ACI3L5_14245) pilD 3150607..3151476 (+) 870 WP_045421884.1 A24 family peptidase Machinery gene
  ACI3L5_RS14250 (ACI3L5_14250) coaE 3151477..3152091 (+) 615 WP_012128880.1 dephospho-CoA kinase -
  ACI3L5_RS14255 (ACI3L5_14255) zapD 3152119..3152859 (+) 741 WP_012128881.1 cell division protein ZapD -
  ACI3L5_RS14260 (ACI3L5_14260) yacG 3152922..3153116 (+) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  ACI3L5_RS14265 (ACI3L5_14265) rplS 3153618..3153971 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACI3L5_RS14270 (ACI3L5_14270) trmD 3154013..3154756 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACI3L5_RS14275 (ACI3L5_14275) rimM 3154784..3155332 (-) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45005.26 Da        Isoelectric Point: 10.4119

>NTDB_id=1071972 ACI3L5_RS14240 WP_404973275.1 3149311..3150534(+) (pilC) [Vibrio campbellii strain LB10]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKINHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVGLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALRTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1071972 ACI3L5_RS14240 WP_404973275.1 3149311..3150534(+) (pilC) [Vibrio campbellii strain LB10]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCATTTATCACCAAGATCAATCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACAAGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGGCCTTTTATTGGACTGAGTTTTGTGGGCCTGCTCATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAGAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCCGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTAGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.017

100

0.99
  pilC Vibrio cholerae strain A1552

73.75

98.28

0.725
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.655

99.754

0.396
  pilG Neisseria gonorrhoeae MS11

39.012

99.509

0.388
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment