Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACI3L5_RS14245 | Genome accession | NZ_CP173389 |
| Coordinates | 3150607..3151476 (+) | Length | 289 a.a. |
| NCBI ID | WP_045421884.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LB10 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3145607..3156476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI3L5_RS14225 (ACI3L5_14225) | nadC | 3145989..3146876 (+) | 888 | WP_399425123.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACI3L5_RS14230 (ACI3L5_14230) | pilA | 3147142..3147591 (+) | 450 | WP_399425124.1 | pilin | Machinery gene |
| ACI3L5_RS14235 (ACI3L5_14235) | pilB | 3147591..3149276 (+) | 1686 | WP_399425125.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACI3L5_RS14240 (ACI3L5_14240) | pilC | 3149311..3150534 (+) | 1224 | WP_404973275.1 | type II secretion system F family protein | Machinery gene |
| ACI3L5_RS14245 (ACI3L5_14245) | pilD | 3150607..3151476 (+) | 870 | WP_045421884.1 | A24 family peptidase | Machinery gene |
| ACI3L5_RS14250 (ACI3L5_14250) | coaE | 3151477..3152091 (+) | 615 | WP_012128880.1 | dephospho-CoA kinase | - |
| ACI3L5_RS14255 (ACI3L5_14255) | zapD | 3152119..3152859 (+) | 741 | WP_012128881.1 | cell division protein ZapD | - |
| ACI3L5_RS14260 (ACI3L5_14260) | yacG | 3152922..3153116 (+) | 195 | WP_005534053.1 | DNA gyrase inhibitor YacG | - |
| ACI3L5_RS14265 (ACI3L5_14265) | rplS | 3153618..3153971 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| ACI3L5_RS14270 (ACI3L5_14270) | trmD | 3154013..3154756 (-) | 744 | WP_005534054.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACI3L5_RS14275 (ACI3L5_14275) | rimM | 3154784..3155332 (-) | 549 | WP_005534055.1 | ribosome maturation factor RimM | - |
| ACI3L5_RS14280 (ACI3L5_14280) | rpsP | 3155360..3155608 (-) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32548.75 Da Isoelectric Point: 7.5715
>NTDB_id=1071973 ACI3L5_RS14245 WP_045421884.1 3150607..3151476(+) (pilD) [Vibrio campbellii strain LB10]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCHSSISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWTGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCHSSISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWTGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=1071973 ACI3L5_RS14245 WP_045421884.1 3150607..3151476(+) (pilD) [Vibrio campbellii strain LB10]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGTGTACCTCGCTCGTCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCACTCGTCCATCAGCGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGACAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGTGTACCTCGCTCGTCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCACTCGTCCATCAGCGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGACAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
97.924 |
100 |
0.979 |
| pilD | Vibrio cholerae strain A1552 |
75 |
99.654 |
0.747 |
| pilD | Acinetobacter nosocomialis M2 |
51.825 |
94.81 |
0.491 |
| pilD | Acinetobacter baumannii D1279779 |
52.03 |
93.772 |
0.488 |
| pilD | Neisseria gonorrhoeae MS11 |
45.652 |
95.502 |
0.436 |