Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI3L9_RS05640 Genome accession   NZ_CP173385
Coordinates   1286175..1287398 (+) Length   407 a.a.
NCBI ID   WP_079400987.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281175..1292398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS05620 (ACI3L9_05620) ampD 1282218..1282769 (-) 552 WP_079400990.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACI3L9_RS05625 (ACI3L9_05625) nadC 1282862..1283749 (+) 888 WP_012128875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACI3L9_RS05630 (ACI3L9_05630) - 1284015..1284455 (+) 441 WP_061065377.1 pilin -
  ACI3L9_RS05635 (ACI3L9_05635) pilB 1284455..1286140 (+) 1686 WP_079400988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI3L9_RS05640 (ACI3L9_05640) pilC 1286175..1287398 (+) 1224 WP_079400987.1 type II secretion system F family protein Machinery gene
  ACI3L9_RS05645 (ACI3L9_05645) pilD 1287471..1288340 (+) 870 WP_012128879.1 A24 family peptidase Machinery gene
  ACI3L9_RS05650 (ACI3L9_05650) coaE 1288341..1288955 (+) 615 WP_079400986.1 dephospho-CoA kinase -
  ACI3L9_RS05655 (ACI3L9_05655) zapD 1288983..1289723 (+) 741 WP_012128881.1 cell division protein ZapD -
  ACI3L9_RS05660 (ACI3L9_05660) yacG 1289786..1289980 (+) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  ACI3L9_RS05665 (ACI3L9_05665) rplS 1290370..1290723 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACI3L9_RS05670 (ACI3L9_05670) trmD 1290765..1291508 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACI3L9_RS05675 (ACI3L9_05675) rimM 1291536..1292084 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACI3L9_RS05680 (ACI3L9_05680) rpsP 1292112..1292360 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44977.25 Da        Isoelectric Point: 10.3971

>NTDB_id=1071854 ACI3L9_RS05640 WP_079400987.1 1286175..1287398(+) (pilC) [Vibrio campbellii strain LB198]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKINHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVGLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1071854 ACI3L9_RS05640 WP_079400987.1 1286175..1287398(+) (pilC) [Vibrio campbellii strain LB198]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCATTTATCACCAAGATCAATCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACAAGAGCGGTGGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGGGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGCTCCGACTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.901

99.754

0.398
  pilG Neisseria gonorrhoeae MS11

39.012

99.509

0.388
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment