Detailed information NTG1071855

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI3L9_RS05645
• Genome accession: NZ_CP173385
• Coordinates: 1287471..1288340 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB198
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1282471..1293340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L9_RS05625 (ACI3L9_05625)	nadC	1282862..1283749 (+)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACI3L9_RS05630 (ACI3L9_05630)	-	1284015..1284455 (+)	441	WP_061065377.1	pilin	-
ACI3L9_RS05635 (ACI3L9_05635)	pilB	1284455..1286140 (+)	1686	WP_079400988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACI3L9_RS05640 (ACI3L9_05640)	pilC	1286175..1287398 (+)	1224	WP_079400987.1	type II secretion system F family protein	Machinery gene
ACI3L9_RS05645 (ACI3L9_05645)	pilD	1287471..1288340 (+)	870	WP_012128879.1	A24 family peptidase	Machinery gene
ACI3L9_RS05650 (ACI3L9_05650)	coaE	1288341..1288955 (+)	615	WP_079400986.1	dephospho-CoA kinase	-
ACI3L9_RS05655 (ACI3L9_05655)	zapD	1288983..1289723 (+)	741	WP_012128881.1	cell division protein ZapD	-
ACI3L9_RS05660 (ACI3L9_05660)	yacG	1289786..1289980 (+)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
ACI3L9_RS05665 (ACI3L9_05665)	rplS	1290370..1290723 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACI3L9_RS05670 (ACI3L9_05670)	trmD	1290765..1291508 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACI3L9_RS05675 (ACI3L9_05675)	rimM	1291536..1292084 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
ACI3L9_RS05680 (ACI3L9_05680)	rpsP	1292112..1292360 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=1071855 ACI3L9_RS05645 WP_012128879.1 1287471..1288340(+) (pilD) [Vibrio campbellii strain LB198]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1071855 ACI3L9_RS05645 WP_012128879.1 1287471..1288340(+) (pilD) [Vibrio campbellii strain LB198]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCTGCATTGGGTGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439