Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACH59B_RS10470 Genome accession   NZ_CP173059
Coordinates   2307189..2308457 (+) Length   422 a.a.
NCBI ID   WP_164965502.1    Uniprot ID   -
Organism   MAG: Paenibacillus sp. DP01     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302189..2313457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH59B_RS10440 - 2303028..2303282 (+) 255 WP_016821001.1 DUF3243 domain-containing protein -
  ACH59B_RS10445 - 2303512..2304285 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  ACH59B_RS10450 - 2304316..2305410 (+) 1095 WP_404303676.1 helix-turn-helix domain-containing protein -
  ACH59B_RS10455 - 2305495..2305659 (+) 165 WP_013370749.1 hypothetical protein -
  ACH59B_RS10460 - 2305805..2306296 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  ACH59B_RS10465 pgsA 2306506..2307093 (+) 588 WP_016821003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH59B_RS10470 cinA 2307189..2308457 (+) 1269 WP_164965502.1 competence/damage-inducible protein A Machinery gene
  ACH59B_RS10475 recA 2308683..2309744 (+) 1062 WP_025364668.1 recombinase RecA Machinery gene
  ACH59B_RS10480 - 2309955..2310680 (+) 726 WP_404303679.1 regulatory protein RecX -
  ACH59B_RS10485 rny 2311066..2312610 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46368.38 Da        Isoelectric Point: 4.8104

>NTDB_id=1070196 ACH59B_RS10470 WP_164965502.1 2307189..2308457(+) (cinA) [MAG: Paenibacillus sp. DP01]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAQRDKETEAYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1070196 ACH59B_RS10470 WP_164965502.1 2307189..2308457(+) (cinA) [MAG: Paenibacillus sp. DP01]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTATCACA
AGAGCTAGCTACAATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GACTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGACCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTTGATCAGTTTTTCCGGAACCGCGG
GGTCGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACAGGTTTAG
CTATAGGGGATGCAATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCGCCTAAGGAGCTTAAACCTATGTTT
GCAAATCATGCCAAACCATGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAGATGCCGATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACTCGCTTGCTAGATCTGATCCAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTTACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTGACTGCC
ACGGAAGTACAAATTCAACAACGTCTTTCCGAATATATGTATGCAAGTGAAGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAACGCGGACTCACTGTGAGTGCGGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGAATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCC
TATGATTATTTGGAAGGCGACCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGTGATTTCGGACTTTCCGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGTCTGG
TATATATTGGTATTGCTCAGCGTGACAAGGAAACGGAGGCATATGAGCTAAATTTAAGCGGTAACCGTGAGACCATCCGT
TTGCGATCCGTCAAAGCTATCTTGTACAGATTGTGGCGTCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Streptococcus mutans UA159

45.775

100

0.462
  cinA Bacillus subtilis subsp. subtilis str. 168

47.772

95.735

0.457
  cinA Streptococcus suis isolate S10

43.89

95.024

0.417

Multiple sequence alignment