Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACIHQS_RS14750 Genome accession   NZ_CP173025
Coordinates   3103279..3105411 (-) Length   710 a.a.
NCBI ID   WP_404231745.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3098279..3110411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14735 (ACIHQS_14735) - 3100700..3101578 (-) 879 WP_404228906.1 hypothetical protein -
  ACIHQS_RS14740 (ACIHQS_14740) aroB 3101595..3102677 (-) 1083 WP_023013843.1 3-dehydroquinate synthase -
  ACIHQS_RS14745 (ACIHQS_14745) aroK 3102699..3103259 (-) 561 WP_404228909.1 shikimate kinase AroK -
  ACIHQS_RS14750 (ACIHQS_14750) pilQ 3103279..3105411 (-) 2133 WP_404231745.1 type IV pilus secretin PilQ Machinery gene
  ACIHQS_RS14755 (ACIHQS_14755) pilP 3105473..3106000 (-) 528 WP_004877829.1 pilus assembly protein PilP Machinery gene
  ACIHQS_RS14760 (ACIHQS_14760) pilO 3106003..3106737 (-) 735 WP_404228912.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACIHQS_RS14765 (ACIHQS_14765) pilN 3106734..3107378 (-) 645 WP_374973967.1 PilN domain-containing protein Machinery gene
  ACIHQS_RS14770 (ACIHQS_14770) comM 3107378..3108436 (-) 1059 WP_374973966.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77351.11 Da        Isoelectric Point: 5.7703

>NTDB_id=1070010 ACIHQS_RS14750 WP_404231745.1 3103279..3105411(-) (pilQ) [Acinetobacter venetianus strain AVYS1]
MNRAFRQFSMAAITIAVMQAASAQVAMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPGRLILDFDKAQQTLKRTSI
PVSTNEANSIDVASDDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSVQPQTSAVMKSSVNQVQQGVSNIGFQRGKDGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGSKIPTHLARRLNTNDFATPVASIDAYNDKGNGIINIQSAGSYEYMAYQAENKL
TISLKRPQENTPQKAKAQAYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPIPELIKSEEDEAKAIAQSIKLAPIQSEYIKLSYAKAADILKLIEESRDGKGAVSNRTASSDSLALE
SLLSPRGSAVADTRTNTLIVNDTAVNIDKIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGITNNNDLLV
GGSDTTLWNLREPKKDDELGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQAAKIESGTKIPYTSSSGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSTPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQTKVPFLGDIPYIGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=1070010 ACIHQS_RS14750 WP_404231745.1 3103279..3105411(-) (pilQ) [Acinetobacter venetianus strain AVYS1]
ATGAATCGTGCATTCCGACAATTTTCTATGGCTGCTATTACTATAGCGGTAATGCAGGCTGCTTCAGCTCAGGTAGCGAT
GACGAATATTGTACCGATGAGTTTGGCTGATCAAGGTACAGAGATTCGAATCATGTTTAATGGTTTACCACCTCAGCCAC
AAGCATATCAACTTGAGCAGCCAGGTCGATTAATTCTAGATTTCGATAAAGCTCAACAAACATTGAAAAGAACGTCTATT
CCAGTGTCTACGAATGAAGCAAATTCGATTGATGTGGCTTCTGATGATCAGCGTTCCCGTGTAATTGTAAATCTGAAAGA
TGCTGGTGCATTTACGACTCGTGTTGAAGGTAATACTTTTGTACTGAAAATTAATTCTGTACAACCTCAGACTAGTGCTG
TAATGAAATCTTCGGTGAATCAGGTACAGCAAGGTGTATCAAATATTGGTTTTCAGCGTGGTAAAGATGGTGAAGGTTTA
GTTGTTATTGATCTGCTGGGAAGTAATACGCCAGTTGATGTTCAACAACAAGGAAGTAAGATTGTTGTTCGAACAATGGG
AAGTAAAATCCCTACTCATTTAGCGCGTCGTTTAAATACCAATGATTTTGCAACACCAGTTGCCAGTATTGACGCATATA
ATGATAAAGGTAATGGAATTATTAATATCCAGTCTGCGGGTAGCTATGAGTATATGGCATATCAAGCAGAAAATAAGCTG
ACGATCAGTCTTAAGCGGCCTCAAGAGAACACACCGCAAAAAGCCAAAGCTCAGGCGTATACAGGTAATAAAATTTCTTT
GGATTTCCAAGATATTGAGGTGCGCCGAGTATTACAACTTTTGGCTGACTTCACTGGAATCAATATGGTTGCTGCGGATA
CAGTGCAAGGGAACATTACTTTGCGTTTAAAGGATGTTCCTTGGGATCAGGCATTAGATATCGTATTAAAAACTAAGAAT
CTCGATAAACGTCGCAATGGTAATGTGATTTGGATTGCGCCTATTCCTGAGTTGATTAAGTCTGAGGAAGATGAGGCGAA
AGCGATTGCTCAAAGTATTAAATTAGCGCCTATTCAGTCAGAATATATTAAATTAAGTTATGCGAAAGCTGCTGATATTT
TAAAGTTAATCGAAGAATCAAGAGATGGTAAAGGTGCTGTTTCTAATCGTACAGCTAGTTCAGATTCTCTTGCTTTAGAG
AGCTTATTGAGCCCTAGAGGTAGTGCTGTAGCTGATACAAGAACGAATACTTTAATTGTTAATGATACGGCTGTTAATAT
TGATAAAATACGTAAAATGATTGATCTACTTGATGTTTCTGTTAAGCAAGTCATGATTGAAGCGCGTATTGTTCGAGCAA
GTACCGATTTCACTAAAGAGATGGGTGTGAAATGGGGGATTTTATCCCAAGGTATTACTAATAATAATGATTTATTAGTT
GGAGGGAGTGATACAACCTTATGGAATTTGCGGGAACCTAAAAAAGATGATGAATTGGGGGGGTGGAAGTATGAAATTGA
GCGCCCAGATAATCTAAATGTTGATTTAGGGGCTGTTACACCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTAGCCTTT
CTGACTTTATGTTGGATTTAGAGCTTTCAGCTGTACAGGCTGATGGTTATGGTGAGGTAATTTCTACACCTAAAGTGATG
ACTGCTGATAAACAAGCGGCAAAAATTGAATCAGGTACAAAAATCCCATATACCTCTTCGTCTGGCGGCGGAGCAAATGC
AGTTCCTAAAACTGAATTTATTGACGCAACTTTAAGTTTGGATGTAACTCCTAGCATTACACCTGATGGTAAAGTAATGA
TGAAGTTGAATATCACTAAGGATGCACCTAGTACGCCAACACCTACTGGCCAATTAACGATTAGCAAAAACTCTATTGAT
ACCAATGTATTAGTGGATAATGGCGAAACCGTTGTTTTAGGTGGGATTTTTGAGCAGGAAAATATTAGCTCTCAAACAAA
AGTACCTTTCTTAGGCGATATTCCTTACATTGGTCGATTATTCCGTCGTGATCTTAAAACGGATAATAAACGTGAACTGC
TAATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-333)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

AMIN domain (AMIN)

(37-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.481

100

0.749
  pilQ Acinetobacter baumannii strain A118

73.343

100

0.748
  comQ Acinetobacter baylyi ADP1

70.014

100

0.707
  pilQ Pseudomonas aeruginosa PAK

39.237

100

0.406
  pilQ Legionella pneumophila strain ERS1305867

37.698

97.887

0.369
  pilQ Legionella pneumophila strain Lp02

37.554

97.887

0.368

Multiple sequence alignment