Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACIHQS_RS14760 Genome accession   NZ_CP173025
Coordinates   3106003..3106737 (-) Length   244 a.a.
NCBI ID   WP_404228912.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3101003..3111737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14740 (ACIHQS_14740) aroB 3101595..3102677 (-) 1083 WP_023013843.1 3-dehydroquinate synthase -
  ACIHQS_RS14745 (ACIHQS_14745) aroK 3102699..3103259 (-) 561 WP_404228909.1 shikimate kinase AroK -
  ACIHQS_RS14750 (ACIHQS_14750) pilQ 3103279..3105411 (-) 2133 WP_404231745.1 type IV pilus secretin PilQ Machinery gene
  ACIHQS_RS14755 (ACIHQS_14755) pilP 3105473..3106000 (-) 528 WP_004877829.1 pilus assembly protein PilP Machinery gene
  ACIHQS_RS14760 (ACIHQS_14760) pilO 3106003..3106737 (-) 735 WP_404228912.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACIHQS_RS14765 (ACIHQS_14765) pilN 3106734..3107378 (-) 645 WP_374973967.1 PilN domain-containing protein Machinery gene
  ACIHQS_RS14770 (ACIHQS_14770) comM 3107378..3108436 (-) 1059 WP_374973966.1 pilus assembly protein PilM Machinery gene
  ACIHQS_RS14775 (ACIHQS_14775) ponA 3108599..3111187 (+) 2589 WP_404228916.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27497.22 Da        Isoelectric Point: 4.7428

>NTDB_id=1070012 ACIHQS_RS14760 WP_404228912.1 3106003..3106737(-) (pilO) [Acinetobacter venetianus strain AVYS1]
MSQEELNDLNQDVVVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKITCWIFVFLAVVALGYFVVIKSQLESIANAQAKEQ
NLLNEFRDKDSKLRNLQQLQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLESEVKQEFFIEQPI
SIEATGDYHAFGAFVTGIAALPRIVTLHDFVVEAKPDTQKKSDIPVINYSVKAKTYRYIGVDDQAGTDTVSPATQPTANA
QGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1070012 ACIHQS_RS14760 WP_404228912.1 3106003..3106737(-) (pilO) [Acinetobacter venetianus strain AVYS1]
ATGAGTCAAGAAGAACTAAATGACCTCAATCAAGATGTTGTAGTCAAGAAAAAGAAAATGACTGTAGAGCAGTTTTTCCA
ACAATTTAACACGTTGGATATGAATAACTATGGTAGTTGGCCTCTGTCAGTTAAAATTACGTGTTGGATTTTTGTTTTCT
TAGCGGTGGTGGCGCTTGGTTATTTTGTCGTCATTAAATCTCAGCTTGAGTCAATTGCGAATGCGCAAGCTAAAGAGCAA
AATTTGCTCAATGAATTTAGAGATAAAGACTCTAAATTAAGAAACTTGCAGCAACTCCAAGCACAATTACAAGAAATGGA
AGCGAATTTTAATCAACAGCTTGAACAGCTTCCAAAAGAAACAGAAATCCCAAGTTTGGTTGAAGATATTAACTTAACAG
GTGTAAATTCTGGTCTGAAATTTAAGAATATCCGTTTAGAGAGTGAAGTTAAGCAAGAATTCTTTATTGAGCAGCCGATT
AGTATAGAGGCTACTGGCGATTATCATGCATTTGGCGCGTTCGTTACGGGGATTGCTGCGTTACCTCGAATCGTAACGCT
ACATGATTTTGTTGTAGAAGCTAAACCTGATACACAAAAGAAATCAGATATTCCTGTGATTAATTACTCAGTTAAAGCAA
AAACATATCGTTATATTGGGGTAGATGATCAAGCTGGTACGGACACTGTTTCTCCAGCAACTCAACCAACTGCTAATGCT
CAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.917

98.361

0.717
  comO Acinetobacter baylyi ADP1

76.316

93.443

0.713

Multiple sequence alignment