Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAM56_RS20780 Genome accession   NZ_AP028667
Coordinates   4385280..4386509 (+) Length   409 a.a.
NCBI ID   WP_369648809.1    Uniprot ID   -
Organism   Variovorax sp. V59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4380280..4391509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM56_RS20750 (GmRootV59_41250) cgtA 4380356..4381444 (-) 1089 WP_369648808.1 Obg family GTPase CgtA -
  ACAM56_RS20755 (GmRootV59_41260) rpmA 4381515..4381772 (-) 258 WP_015866991.1 50S ribosomal protein L27 -
  ACAM56_RS20760 (GmRootV59_41270) rplU 4381785..4382096 (-) 312 WP_015866992.1 50S ribosomal protein L21 -
  ACAM56_RS20765 (GmRootV59_41280) - 4382285..4383277 (+) 993 WP_145740450.1 polyprenyl synthetase family protein -
  ACAM56_RS20775 (GmRootV59_41290) pilB 4383517..4385250 (+) 1734 WP_145740448.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM56_RS20780 (GmRootV59_41300) pilC 4385280..4386509 (+) 1230 WP_369648809.1 type II secretion system F family protein Machinery gene
  ACAM56_RS20785 (GmRootV59_41310) - 4386509..4387474 (+) 966 WP_369648810.1 A24 family peptidase -
  ACAM56_RS20790 (GmRootV59_41320) coaE 4387485..4388090 (+) 606 WP_192322490.1 dephospho-CoA kinase -
  ACAM56_RS20795 (GmRootV59_41330) - 4388168..4389661 (+) 1494 WP_369648811.1 MBOAT family protein -
  ACAM56_RS20800 (GmRootV59_41340) - 4389668..4390687 (+) 1020 WP_369648812.1 hypothetical protein -
  ACAM56_RS20805 (GmRootV59_41350) zapD 4390724..4391479 (+) 756 WP_018906807.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44764.38 Da        Isoelectric Point: 9.6463

>NTDB_id=106808 ACAM56_RS20780 WP_369648809.1 4385280..4386509(+) (pilC) [Variovorax sp. V59]
MATVASTRTSNTLKEFVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKTIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGVIGGGT
YFFLQAWKRNERVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=106808 ACAM56_RS20780 WP_369648809.1 4385280..4386509(+) (pilC) [Variovorax sp. V59]
ATGGCAACAGTGGCATCCACCCGCACCTCGAACACGCTCAAGGAATTTGTCTACGAGTGGGAGGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTCCGGGCCGCCGGCGAGAACCAGGTGCAGGCCGCCCTGCGGCGCCAGGGGGTCCTCGCGT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGACCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGCTCGCA
ACCATGATGAAGGCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCGTGGGCCGCGGCAACGCGAACCCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAGACCGGCACCTCGCTGTCATCCGCCTTCCGGAAGTTTCCGAAGTACTTCG
ACAACCTCTACTGCAACCTGGTGGAAGCCGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTGGACCGGCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCCCTGATGTATCCCACCTCCGTGGTGGTGGTCGCGTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCACCTCGTTCGGCGCCGACCTGCCCGCGC
CCACGCTGTTCGTGATGGCGATGAGCGAATTCTTCGTCTCCTACTGGTGGCTGATCTTCGGCGTGATCGGCGGCGGCACC
TACTTCTTCCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGCGGGTCATGGACCGTGCGCTGCTGCGCGTGCCGATCTT
CGGCACGCTGATCGAGAAGTCGTGCGTGGCCCGCTGGACCCGCACCCTTGCCACCATGTTCGCCGCCGGCGTTCCGCTGG
TCGAGGCGCTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGGCCAAGATCCAGCAGGAGGTC
TCGACCGGCACGAGCCTCACGACGGCCATGACCAACGTCAACCTGTTCCCTTCGATGGTGATCCAGATGACCGCGATCGG
CGAGGAGTCCGGCTCGATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTGGACGACATGGTGGCCG
GCCTGTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCGTGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCGATCTTCAAGTTGGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54

97.8

0.528
  pilG Neisseria gonorrhoeae MS11

52.525

96.822

0.509
  pilG Neisseria meningitidis 44/76-A

52.273

96.822

0.506
  pilC Acinetobacter baylyi ADP1

51.759

97.311

0.504
  pilC Acinetobacter baumannii D1279779

49.874

97.066

0.484
  pilC Legionella pneumophila strain ERS1305867

48.883

98.533

0.482
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

38.663

100

0.396
  pilC Vibrio campbellii strain DS40M4

39.651

98.044

0.389

Multiple sequence alignment