Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSU12_RS08280 Genome accession   NZ_CP172407
Coordinates   1724118..1725353 (+) Length   411 a.a.
NCBI ID   WP_034769898.1    Uniprot ID   A0A090KRZ1
Organism   Caldifermentibacillus hisashii strain FSL W8-0985     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1719118..1730353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU12_RS08255 (NSU12_08255) ymfI 1720083..1720814 (+) 732 WP_328186716.1 elongation factor P 5-aminopentanone reductase -
  NSU12_RS08260 (NSU12_08260) - 1721055..1721312 (+) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSU12_RS08265 (NSU12_08265) - 1721643..1722434 (+) 792 WP_328186718.1 DUF3388 domain-containing protein -
  NSU12_RS08270 (NSU12_08270) - 1722452..1723348 (+) 897 WP_343127708.1 RodZ domain-containing protein -
  NSU12_RS08275 (NSU12_08275) pgsA 1723466..1724044 (+) 579 WP_041846562.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSU12_RS08280 (NSU12_08280) cinA 1724118..1725353 (+) 1236 WP_034769898.1 competence/damage-inducible protein A Machinery gene
  NSU12_RS08285 (NSU12_08285) - 1725552..1725800 (+) 249 WP_034769901.1 hypothetical protein -
  NSU12_RS08290 (NSU12_08290) - 1725848..1726198 (+) 351 WP_034769902.1 hypothetical protein -
  NSU12_RS08295 (NSU12_08295) - 1726336..1726782 (+) 447 WP_095141167.1 YaiI/YqxD family protein -
  NSU12_RS08300 (NSU12_08300) - 1726917..1727054 (+) 138 WP_343127709.1 hypothetical protein -
  NSU12_RS08305 (NSU12_08305) - 1727087..1727818 (-) 732 WP_343127710.1 CAP domain-containing protein -
  NSU12_RS08310 (NSU12_08310) - 1727889..1729247 (+) 1359 WP_343127195.1 transposase family protein -
  NSU12_RS08315 (NSU12_08315) - 1729455..1729697 (-) 243 WP_343127711.1 hypothetical protein -
  NSU12_RS08320 (NSU12_08320) - 1730170..1730271 (+) 102 WP_082026100.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45203.66 Da        Isoelectric Point: 4.9457

>NTDB_id=1067490 NSU12_RS08280 WP_034769898.1 1724118..1725353(+) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0985]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFYHTVVGDNAERLKRAVEIAESRSNLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFQGGIVSYSPEIKINVLGVNPD
TVETYGVVSKECAMEMAENVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1067490 NSU12_RS08280 WP_034769898.1 1724118..1725353(+) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0985]
TTGAATGGTGAAATTATTGCCGTAGGGTCCGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTACCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGTATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTCAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCCGGAC
ACTGTTGAAACTTATGGTGTCGTCAGTAAAGAATGCGCAATGGAGATGGCAGAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTTTATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCTAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-404)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090KRZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.425

99.027

0.608
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

48.042

93.187

0.448
  cinA Streptococcus mitis NCTC 12261

47.781

93.187

0.445
  cinA Streptococcus mitis SK321

47.781

93.187

0.445
  cinA Streptococcus pneumoniae Rx1

47.781

93.187

0.445
  cinA Streptococcus pneumoniae R6

47.781

93.187

0.445
  cinA Streptococcus pneumoniae D39

47.52

93.187

0.443
  cinA Streptococcus suis isolate S10

39.578

92.214

0.365

Multiple sequence alignment