Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACH2FV_RS08280 Genome accession   NZ_CP172339
Coordinates   1628902..1630152 (+) Length   416 a.a.
NCBI ID   WP_395894605.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1623902..1635152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS08255 (ACH2FV_08255) ymfI 1625324..1626052 (+) 729 WP_056766499.1 elongation factor P 5-aminopentanone reductase -
  ACH2FV_RS08260 (ACH2FV_08260) - 1626126..1626383 (+) 258 WP_056766502.1 DUF3243 domain-containing protein -
  ACH2FV_RS08265 (ACH2FV_08265) - 1626515..1627306 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  ACH2FV_RS08270 (ACH2FV_08270) - 1627330..1628229 (+) 900 WP_056766505.1 helix-turn-helix domain-containing protein -
  ACH2FV_RS08275 (ACH2FV_08275) pgsA 1628304..1628885 (+) 582 WP_076839598.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH2FV_RS08280 (ACH2FV_08280) cinA 1628902..1630152 (+) 1251 WP_395894605.1 competence/damage-inducible protein A Machinery gene
  ACH2FV_RS08285 (ACH2FV_08285) recA 1630331..1631374 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  ACH2FV_RS08290 (ACH2FV_08290) - 1631518..1632693 (+) 1176 WP_395894607.1 serine hydrolase domain-containing protein -
  ACH2FV_RS08295 (ACH2FV_08295) rny 1632927..1634489 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45593.68 Da        Isoelectric Point: 4.7414

>NTDB_id=1066508 ACH2FV_RS08280 WP_395894605.1 1628902..1630152(+) (cinA) [Bacillus safensis subsp. safensis strain KGU003]
MKSERKAEIIAVGSELLLGQITNTNAQFISIQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1066508 ACH2FV_RS08280 WP_395894605.1 1628902..1630152(+) (cinA) [Bacillus safensis subsp. safensis strain KGU003]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCATACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCGGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCACGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGTGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGGATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACACTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGTAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment