Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACF8YQ_RS03105 Genome accession   NZ_CP172297
Coordinates   679441..681552 (+) Length   703 a.a.
NCBI ID   WP_224851273.1    Uniprot ID   -
Organism   Marinobacter sp. W-8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674441..686552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8YQ_RS03085 pilM 676643..677707 (+) 1065 WP_036149326.1 pilus assembly protein PilM Machinery gene
  ACF8YQ_RS03090 - 677707..678270 (+) 564 WP_011784346.1 PilN domain-containing protein -
  ACF8YQ_RS03095 - 678270..678881 (+) 612 WP_396622559.1 type 4a pilus biogenesis protein PilO -
  ACF8YQ_RS03100 - 678884..679426 (+) 543 WP_153741467.1 pilus assembly protein PilP -
  ACF8YQ_RS03105 pilQ 679441..681552 (+) 2112 WP_224851273.1 type IV pilus secretin PilQ family protein Machinery gene
  ACF8YQ_RS03110 aroK 681688..682278 (+) 591 WP_396622560.1 shikimate kinase AroK -
  ACF8YQ_RS03115 aroB 682247..683344 (+) 1098 WP_396622561.1 3-dehydroquinate synthase -
  ACF8YQ_RS03120 - 683377..684948 (+) 1572 WP_396622562.1 AAA family ATPase -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 75813.21 Da        Isoelectric Point: 4.3474

>NTDB_id=1066076 ACF8YQ_RS03105 WP_224851273.1 679441..681552(+) (pilQ) [Marinobacter sp. W-8]
MNSRNMHEQTGLGSRLAMFKKLNVCVGVIAIGLWSGLASAVTLQDLSFSSLPGERLEVTMQFDGTPPEPSGYTIERPARI
AVDLKDTTSALNQRSIPLGTGNAQSVTVVETKDRTRLIFNLVELVPHDTVRTNNSLVMTIGGESDAVASTSQPAQRTATV
SSASSNALAGVDFRRGKEGEGRVIVDLGSNTATVNLNELGGRIRLTMPDLQVPADLRRRLDVTDFATPVTRIDTFVEDGS
AVVEIRPEGDYDYIAYQSGREFTVSVEALSQEEAEARREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVG
GSITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPAEEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADVVAL
IQADEELISSRGFVSSDARTNTISVRETAEKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGD
DVITVGGSLGTLQEARDAASGGSNTISFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVT
ADRQTASIKSGEEIPYQEATSSGATNVEFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLV
ANGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHVDERSELLIFITPKIIKNDILQ

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=1066076 ACF8YQ_RS03105 WP_224851273.1 679441..681552(+) (pilQ) [Marinobacter sp. W-8]
ATGAATTCAAGAAACATGCACGAACAAACAGGTTTAGGGTCGAGGCTAGCGATGTTCAAAAAACTCAATGTCTGCGTAGG
CGTGATTGCCATCGGGTTATGGAGCGGCCTGGCCAGCGCGGTCACGCTTCAGGACTTGTCGTTTTCGTCGCTGCCAGGGG
AGCGGCTGGAAGTCACCATGCAGTTTGATGGCACGCCGCCTGAGCCTTCGGGCTATACCATAGAGCGGCCAGCCCGGATT
GCGGTGGATCTGAAGGATACCACCAGTGCCCTGAATCAGCGCAGCATTCCGCTGGGTACAGGTAATGCCCAGAGCGTCAC
CGTGGTGGAAACCAAGGATCGCACCCGTTTGATCTTTAATCTGGTCGAATTGGTGCCTCACGATACCGTACGTACCAATA
ACTCTCTGGTAATGACCATTGGTGGTGAGTCCGATGCCGTCGCCTCAACTTCTCAACCTGCGCAACGGACGGCAACGGTT
TCGTCAGCATCCTCGAACGCGTTGGCCGGTGTCGATTTCCGTCGTGGTAAAGAGGGTGAAGGTCGGGTTATCGTCGATCT
CGGTAGCAACACGGCGACCGTTAATCTGAACGAGTTGGGTGGCCGGATCCGGTTGACAATGCCGGATCTCCAGGTTCCCG
CGGATCTACGTCGGCGCCTTGATGTTACGGATTTTGCAACGCCGGTGACTCGCATTGATACCTTTGTGGAAGATGGAAGT
GCGGTCGTCGAAATTAGACCGGAGGGCGACTACGACTATATCGCCTATCAGTCTGGTCGCGAATTCACTGTGAGTGTTGA
AGCTCTGAGTCAGGAAGAGGCGGAAGCTCGTCGCGAGGAGAAGTTCCCGTATACCGGCGAGAAGCTTTCCCTTAACTTCC
AGGATATTGAAGTTCGCTCTGTGCTTCAGCTGATTGCTGATTTCACTGGCCTGAACCTGGTTGCCAGTGACACGGTGGGC
GGCAGTATCACTCTGCGTCTGCAGAACGTTCCCTGGGATCAGGCGTTGGATCTGATCCTCAAGACCAAAGGTTTGGATAA
GCGTCAGATTGGCAACGTACTGCTGGTTGCGCCTGCTGAGGAAATTGCGGCCCGTGAAAAGCTTGAGCTTGAAACTAACA
AACAGATCGCTGAGTTGGCACCGGTCCGGCTGGATATTATTCAGGTGAACTACGCCAAGGCGGCGGATGTGGTTGCTCTG
ATTCAGGCGGATGAAGAACTGATCTCCTCCCGTGGTTTTGTGTCTTCCGATGCCAGAACCAATACCATCAGTGTTCGGGA
AACCGCTGAGAAGCTGGAGGAAATTCGCCGGCTGGTATCCACGTGGGATGTCCCGGTTCGCCAAGTGTCAATTGAAGCTC
GAATTGTTCGCGCTCAGACAAACGTTGCGGAAGATCTTGGTGTTCGCTGGGGCGGCGCGGCTTACAACGTCGATGGTGAT
GATGTGATCACTGTTGGTGGTTCTCTCGGAACCCTGCAAGAAGCCAGAGATGCTGCAAGCGGAGGCAGCAACACCATTTC
TTTCCCGGGTGCGCTGGGAGTCGATCTTGGTGTAAGTGGTGATGGAGCATCCTCCTTTGCCATCGGGTGGGGAAGTGATG
ACTTCCTGGTGGATCTGGAGCTTTCGGCACTGGAGAGTGATGGTCGCGCGGAAGTGGTTTCGCAGCCTAGGGTTGTAACG
GCTGATCGTCAGACTGCGTCTATCAAGTCCGGTGAAGAAATTCCATATCAGGAGGCAACATCCAGCGGTGCAACCAACGT
AGAGTTCAAAGAAGCAGTGCTCTCGCTTGAGGTTACACCGCAGATTACGCCCGACGACAAGATCATTATGGATCTCGTTG
TAAATCAGGATTCCCGAGGAGAAGTGACTGCAGGTATCCCGTCTATCAATACCAACGAGGTTACAACTCAGGTATTGGTT
GCTAACGGCGAGACGGTTGTACTGGGTGGTATCTTTCAGTCTGAAGTTGCCACTCAGACCACGAAAACCCCATTCCTGGG
TGACATCCCCTATCTCGGGCGCCTGTTCAAACGCACCGAGCATGTTGATGAGCGCAGCGAGCTGTTGATCTTTATTACGC
CGAAGATCATCAAGAACGACATACTGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(386-448)

AMIN domain (AMIN)

(56-137)

Secretin and TonB N terminus short domain (STN)

(312-358)

Bacterial type II and III secretion system protein (Secretin)

(543-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.675

100

0.496
  pilQ Acinetobacter baumannii strain A118

40.859

100

0.42
  pilQ Acinetobacter baumannii D1279779

40.859

100

0.42
  comQ Acinetobacter baylyi ADP1

40.935

100

0.411
  pilQ Legionella pneumophila strain ERS1305867

41.327

94.31

0.39
  pilQ Legionella pneumophila strain Lp02

41.176

94.31

0.388

Multiple sequence alignment