Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PN836_RS08025 Genome accession   NZ_CP171821
Coordinates   1830090..1831301 (+) Length   403 a.a.
NCBI ID   WP_395344723.1    Uniprot ID   -
Organism   Ningiella sp. W23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825090..1836301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN836_RS08005 (PN836_008135) - 1826416..1827186 (-) 771 WP_395344719.1 GntR family transcriptional regulator -
  PN836_RS08010 (PN836_008140) ampE 1827338..1828255 (-) 918 WP_395344720.1 regulatory signaling modulator protein AmpE -
  PN836_RS08015 (PN836_008145) nadC 1828429..1829310 (+) 882 WP_395344721.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PN836_RS08020 (PN836_008150) - 1829567..1830013 (+) 447 WP_395344722.1 pilin -
  PN836_RS08025 (PN836_008155) pilC 1830090..1831301 (+) 1212 WP_395344723.1 type II secretion system F family protein Machinery gene
  PN836_RS08030 (PN836_008160) pilD 1831372..1832250 (+) 879 WP_395344724.1 prepilin peptidase Machinery gene
  PN836_RS08035 (PN836_008165) - 1832496..1833902 (+) 1407 WP_395344725.1 DUF945 family protein -
  PN836_RS08040 (PN836_008170) coaE 1834029..1834655 (+) 627 WP_395344726.1 dephospho-CoA kinase -
  PN836_RS08045 (PN836_008175) zapD 1834692..1835534 (+) 843 WP_395344727.1 cell division protein ZapD -
  PN836_RS08050 (PN836_008180) yacG 1835593..1835829 (+) 237 WP_395344728.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43333.84 Da        Isoelectric Point: 9.0744

>NTDB_id=1064404 PN836_RS08025 WP_395344723.1 1830090..1831301(+) (pilC) [Ningiella sp. W23]
MAKVAETFVWQGADRNGKKTKGEISAASVSEAKNMLRRQGVSAKSVRKQTKPLFSFGEKKVDAQDICVISRQIATMLNAG
VTLIQSLEMIGQGHAKASVRKMMGEITADVKSGNPLNSALRKYPLQFDDLYCDLVETGEQSGALEGIYDRIALYKEKAEA
LKSKIKKAMFYPIAVLVVAFIVTTILLVFVVPQFEDIFAGFGAELPAFTQFVLKISNFVQDFGPYIAAGIVAAGFLFVRA
HRNSPKLRDGVDAYTLKVPVVGEILKKASIARFTRTLSTTFAAGVPLIGALGSAAGASGNAIYREAILYMRKEVAAGIQM
NAAMRATAVFPDMVTQMVAIGEESGSVDEMLGKIATIYEAEVDDMVDGLTALLEPMIMSVLGVVIGGLIIAMYLPIFNMG
AIV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=1064404 PN836_RS08025 WP_395344723.1 1830090..1831301(+) (pilC) [Ningiella sp. W23]
ATGGCTAAAGTAGCTGAAACATTCGTTTGGCAGGGCGCTGACCGTAATGGCAAGAAAACTAAGGGCGAAATCAGCGCGGC
GTCAGTCTCGGAAGCAAAGAACATGCTTCGGCGTCAAGGCGTTTCGGCTAAATCGGTCAGAAAGCAAACAAAGCCACTGT
TTTCGTTTGGAGAAAAAAAAGTTGACGCGCAAGATATATGCGTTATTTCTCGACAGATAGCCACTATGCTCAATGCCGGT
GTCACGCTCATACAATCTCTTGAAATGATTGGGCAAGGCCACGCCAAAGCATCTGTTCGGAAGATGATGGGCGAAATAAC
AGCGGACGTGAAATCGGGCAACCCACTTAATAGCGCCCTTCGCAAATATCCTCTCCAGTTTGATGATTTGTATTGCGATC
TGGTGGAAACAGGAGAGCAATCGGGCGCACTCGAAGGAATTTACGACAGAATTGCCCTATATAAAGAAAAAGCAGAAGCG
CTTAAATCAAAGATAAAGAAAGCTATGTTTTATCCGATAGCTGTATTGGTTGTTGCGTTTATAGTAACAACAATACTCTT
GGTGTTCGTAGTTCCTCAATTCGAAGATATTTTTGCTGGTTTTGGAGCTGAACTGCCCGCATTTACTCAATTCGTATTAA
AAATTTCTAACTTTGTTCAAGACTTTGGGCCGTATATTGCTGCGGGTATCGTTGCAGCCGGATTCCTTTTTGTTCGAGCG
CACCGAAATTCGCCCAAGCTGCGCGATGGCGTCGATGCTTACACGCTTAAAGTTCCAGTGGTTGGTGAAATCCTTAAAAA
AGCCTCTATTGCACGCTTTACTCGCACCCTCTCAACCACTTTTGCAGCTGGTGTTCCGCTTATTGGTGCATTAGGGTCTG
CTGCAGGTGCTTCCGGAAACGCCATTTACCGAGAGGCTATCCTATACATGCGTAAAGAAGTAGCCGCAGGTATTCAAATG
AATGCCGCTATGCGCGCAACTGCTGTATTCCCCGATATGGTAACGCAAATGGTTGCTATCGGTGAAGAATCCGGTTCGGT
GGATGAAATGCTCGGTAAAATTGCCACCATATATGAAGCTGAGGTTGACGACATGGTTGACGGTCTTACCGCTTTACTCG
AGCCAATGATTATGTCTGTGCTTGGCGTGGTGATTGGTGGCCTTATAATTGCAATGTATTTGCCAATCTTTAATATGGGT
GCCATTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

98.263

0.566
  pilC Acinetobacter baumannii D1279779

52.109

100

0.521
  pilC Acinetobacter baylyi ADP1

50.995

99.752

0.509
  pilC Legionella pneumophila strain ERS1305867

49.118

98.511

0.484
  pilC Vibrio cholerae strain A1552

45.226

98.759

0.447
  pilC Vibrio campbellii strain DS40M4

42.965

98.759

0.424
  pilG Neisseria gonorrhoeae MS11

41.975

100

0.422
  pilG Neisseria meningitidis 44/76-A

41.439

100

0.414

Multiple sequence alignment