Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   ACG3JJ_RS01265 Genome accession   NZ_CP171733
Coordinates   233162..234103 (-) Length   313 a.a.
NCBI ID   WP_003108751.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 228162..239103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS01230 (ACG3JJ_01230) - 228337..229026 (+) 690 WP_013794418.1 LexA family transcriptional regulator -
  ACG3JJ_RS01235 (ACG3JJ_01235) - 229040..229213 (+) 174 WP_192813189.1 hypothetical protein -
  ACG3JJ_RS01240 (ACG3JJ_01240) - 229215..229805 (+) 591 WP_013794419.1 hypothetical protein -
  ACG3JJ_RS01245 (ACG3JJ_01245) - 229831..230238 (+) 408 WP_041828634.1 hypothetical protein -
  ACG3JJ_RS01250 (ACG3JJ_01250) - 230243..230560 (+) 318 WP_041828635.1 hypothetical protein -
  ACG3JJ_RS01255 (ACG3JJ_01255) - 230681..232117 (+) 1437 WP_003108747.1 recombinase family protein -
  ACG3JJ_RS01260 (ACG3JJ_01260) comGB 232194..233250 (-) 1057 Protein_245 competence type IV pilus assembly protein ComGB -
  ACG3JJ_RS01265 (ACG3JJ_01265) comYA 233162..234103 (-) 942 WP_003108751.1 competence type IV pilus ATPase ComGA Machinery gene
  ACG3JJ_RS01270 (ACG3JJ_01270) - 234157..234531 (-) 375 WP_003103833.1 DUF1033 family protein -
  ACG3JJ_RS01275 (ACG3JJ_01275) rpoC 234635..238267 (-) 3633 WP_304951727.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36265.62 Da        Isoelectric Point: 6.5048

>NTDB_id=1063811 ACG3JJ_RS01265 WP_003108751.1 233162..234103(-) (comYA) [Streptococcus parauberis strain DB-M5]
MIQGLGKQIISEAMELQVQDIYILPEENGYQLFFRIHDERQKLENFQTSQLQQLMSHFKFLAGMNVGEKRRCQLGSCNYD
IDDSISISLRLSTVGDYRGRESMVIRILYPYQENQTYWEDMDEKINQFIIGRGLYLFAGPVGSGKTSLMYRLIEKNFHDR
QVITIEDPVEIKNPKFLQLQVNDSIGMTYDNLIKLSLRHRPDILVIGEIRDRETAQAVIRASLTGIMVFSTVHAKSIPGV
YYRLLELGINQNELENALRLIVYQRLMGGKGLIDFTNKNYISHSHEKWNQAIDQLVAKGHFPEEKGEKEKIIE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1063811 ACG3JJ_RS01265 WP_003108751.1 233162..234103(-) (comYA) [Streptococcus parauberis strain DB-M5]
ATGATCCAAGGTTTGGGTAAGCAAATAATAAGTGAAGCGATGGAGTTGCAAGTTCAAGATATCTATATTTTACCTGAAGA
GAATGGGTATCAATTGTTTTTCCGAATTCATGATGAAAGGCAAAAATTAGAAAATTTTCAAACAAGTCAATTACAACAAT
TAATGAGTCATTTTAAGTTTTTGGCTGGTATGAATGTTGGCGAAAAAAGAAGGTGTCAGTTAGGTTCTTGTAATTATGAT
ATAGATGATTCTATATCAATCTCATTAAGACTTTCTACAGTTGGTGATTATCGTGGGCGTGAAAGTATGGTTATTCGTAT
TCTTTATCCTTATCAAGAGAATCAAACCTATTGGGAGGATATGGATGAAAAAATTAATCAATTTATAATCGGACGTGGAC
TCTATCTTTTTGCTGGACCAGTTGGATCAGGTAAAACAAGTCTAATGTATAGACTTATTGAGAAAAATTTCCATGACAGG
CAAGTGATTACGATTGAGGATCCAGTTGAAATAAAGAATCCCAAATTCTTACAATTACAAGTTAATGATAGTATTGGAAT
GACTTATGATAATCTCATAAAGTTATCTCTGCGTCATCGACCGGATATTTTAGTAATTGGTGAAATTCGAGATAGGGAGA
CTGCACAGGCTGTGATTAGAGCAAGTTTAACAGGAATTATGGTCTTTTCAACAGTACATGCAAAAAGTATTCCAGGGGTA
TATTATCGCCTTTTAGAATTAGGAATTAATCAAAATGAATTAGAAAACGCCTTAAGATTAATAGTTTATCAAAGATTAAT
GGGAGGGAAAGGTTTAATTGATTTTACTAACAAAAACTATATTAGTCATTCGCATGAAAAATGGAATCAAGCTATTGATC
AGTTGGTTGCAAAAGGACATTTCCCTGAAGAAAAAGGGGAAAAAGAAAAGATTATCGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.218

99.681

0.61
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

99.042

0.607
  comYA Streptococcus mutans UA140

60.897

99.681

0.607
  comYA Streptococcus gordonii str. Challis substr. CH1

57.235

99.361

0.569
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae D39

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae R6

56.09

99.681

0.559
  comGA Lactococcus lactis subsp. cremoris KW2

51.447

99.361

0.511
  comGA Latilactobacillus sakei subsp. sakei 23K

42.545

87.859

0.374

Multiple sequence alignment