Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGHX3_RS15415 Genome accession   NZ_CP171632
Coordinates   3292307..3293569 (+) Length   420 a.a.
NCBI ID   WP_394695527.1    Uniprot ID   -
Organism   Pseudoxanthomonas japonensis strain LY0623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3287307..3298569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHX3_RS15395 (ACGHX3_15395) - 3287465..3288739 (-) 1275 WP_394695523.1 glycosyltransferase family 4 protein -
  ACGHX3_RS15400 (ACGHX3_15400) - 3288822..3289673 (-) 852 WP_394695524.1 glycosyltransferase family 2 protein -
  ACGHX3_RS15405 (ACGHX3_15405) - 3289886..3290215 (+) 330 WP_394695525.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGHX3_RS15410 (ACGHX3_15410) pilB 3290306..3292039 (+) 1734 WP_394695526.1 type IV pilus assembly protein Machinery gene
  ACGHX3_RS15415 (ACGHX3_15415) pilC 3292307..3293569 (+) 1263 WP_394695527.1 type II secretion system F family protein Machinery gene
  ACGHX3_RS15420 (ACGHX3_15420) pilD 3293573..3294436 (+) 864 WP_394695528.1 A24 family peptidase Machinery gene
  ACGHX3_RS15425 (ACGHX3_15425) coaE 3294569..3295186 (+) 618 WP_394695529.1 dephospho-CoA kinase -
  ACGHX3_RS15430 (ACGHX3_15430) - 3295508..3296482 (-) 975 WP_394695530.1 bifunctional MutT family pyrophosphohydrolase/thiamine phosphate synthase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45925.96 Da        Isoelectric Point: 9.8864

>NTDB_id=1062420 ACGHX3_RS15415 WP_394695527.1 3292307..3293569(+) (pilC) [Pseudoxanthomonas japonensis strain LY0623]
MAVTRSAAKSATAPARENPLNLFVWEGTDKRGVKMKGEQSSKNANFLRAELRKQGITPTVVKVKPKPLFGTAGKTISAKE
IAFFSRQLATMMKSGVPMVSSLEIIEGGQKNPRMGKMVQQIRFDIEGGSSLYEAISKHPVQFDELYRNLVRAGESAGVLE
TVLETIASYKENLEALKGKIKKALFYPTAVIAVAILVCAVILIFVVPTFEETFASFGTELPYFTQLVIGLSRFMVSWWWL
ILALVVGAGFLGMYLFKRSPAFQHAVDRMILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALDTVAGATGNSVYEK
AVHRMRDDVSVGYPLNMAMKQTQQFPHMVVQMTAIGEEAGALDNMLFKVAEYYEQEVNNAVDALSSLIEPFIMVIIGVLV
GGLVVALYLPIFKVAATVAG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1062420 ACGHX3_RS15415 WP_394695527.1 3292307..3293569(+) (pilC) [Pseudoxanthomonas japonensis strain LY0623]
ATGGCCGTGACCCGTTCCGCTGCGAAATCCGCCACCGCGCCCGCGCGCGAGAATCCGCTGAACCTGTTCGTCTGGGAGGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGTCGTCCAAGAACGCCAACTTCCTGCGCGCCGAGCTGCGCAAGC
AGGGCATCACCCCGACCGTGGTGAAGGTGAAGCCGAAGCCGCTGTTCGGCACGGCAGGCAAGACCATCTCCGCCAAGGAG
ATCGCCTTCTTCAGCCGCCAACTGGCGACGATGATGAAGTCCGGCGTGCCGATGGTGTCGTCGCTGGAGATCATCGAGGG
CGGCCAGAAGAACCCCCGCATGGGCAAGATGGTGCAGCAGATCCGCTTCGACATCGAAGGCGGCTCGTCGCTGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGCGCCGGCGAGTCGGCGGGTGTGCTCGAG
ACCGTGCTGGAGACCATCGCCAGCTACAAGGAGAACCTGGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GACGGCCGTCATCGCGGTGGCGATCCTGGTCTGCGCGGTGATCCTGATCTTCGTGGTGCCGACGTTCGAGGAGACGTTCG
CCAGCTTCGGCACCGAGCTGCCCTACTTCACCCAACTGGTCATCGGACTGTCGCGCTTCATGGTCAGCTGGTGGTGGCTG
ATCCTCGCGCTGGTGGTGGGTGCGGGCTTCCTGGGCATGTACCTGTTCAAGCGGTCGCCTGCGTTCCAGCATGCGGTCGA
CCGCATGATCCTGCGCGTGCCGGTGATCGGCCAGATCATGCACAACTCGTCGATCGCGCGTTTTGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTCGAGGCGCTGGACACGGTGGCCGGCGCCACTGGCAACTCCGTGTACGAGAAG
GCCGTGCACCGCATGCGCGACGACGTGTCGGTGGGCTACCCGCTGAACATGGCGATGAAGCAGACCCAGCAGTTCCCGCA
CATGGTGGTGCAGATGACCGCCATCGGCGAGGAAGCCGGTGCGCTGGACAACATGCTGTTCAAGGTGGCCGAGTATTACG
AGCAGGAGGTCAACAACGCGGTGGATGCGCTGTCCAGCTTGATCGAGCCCTTCATCATGGTGATCATCGGCGTGCTGGTC
GGTGGCCTGGTGGTGGCGCTGTACCTGCCGATCTTCAAGGTCGCCGCGACGGTAGCCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.764

94.762

0.5
  pilC Legionella pneumophila strain ERS1305867

51

95.238

0.486
  pilC Acinetobacter baylyi ADP1

49.373

95

0.469
  pilC Acinetobacter baumannii D1279779

48.111

94.524

0.455
  pilG Neisseria gonorrhoeae MS11

44.75

95.238

0.426
  pilG Neisseria meningitidis 44/76-A

44.11

95

0.419
  pilC Vibrio cholerae strain A1552

38.806

95.714

0.371

Multiple sequence alignment