Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACGK9W_RS09935 | Genome accession | NZ_CP171359 |
| Coordinates | 2121825..2123045 (+) | Length | 406 a.a. |
| NCBI ID | WP_405420751.1 | Uniprot ID | - |
| Organism | Marinobacter flavimaris strain ZYH30 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2116825..2128045
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGK9W_RS09915 (ACGK9W_09915) | - | 2117109..2117552 (-) | 444 | WP_405420740.1 | pilin | - |
| ACGK9W_RS09920 (ACGK9W_09920) | - | 2117616..2119112 (-) | 1497 | WP_405420743.1 | O-antigen ligase family protein | - |
| ACGK9W_RS09925 (ACGK9W_09925) | - | 2119205..2119678 (-) | 474 | WP_405420746.1 | pilin | - |
| ACGK9W_RS09930 (ACGK9W_09930) | pilB | 2120107..2121822 (+) | 1716 | WP_405420749.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACGK9W_RS09935 (ACGK9W_09935) | pilC | 2121825..2123045 (+) | 1221 | WP_405420751.1 | type II secretion system F family protein | Machinery gene |
| ACGK9W_RS09940 (ACGK9W_09940) | pilD | 2123112..2123987 (+) | 876 | WP_405420754.1 | prepilin peptidase | Machinery gene |
| ACGK9W_RS09945 (ACGK9W_09945) | coaE | 2123988..2124587 (+) | 600 | WP_405420757.1 | dephospho-CoA kinase | - |
| ACGK9W_RS09950 (ACGK9W_09950) | - | 2124580..2125674 (+) | 1095 | WP_405421032.1 | hypothetical protein | - |
| ACGK9W_RS09955 (ACGK9W_09955) | tsaA | 2125674..2126417 (+) | 744 | WP_405420760.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44281.15 Da Isoelectric Point: 9.2633
>NTDB_id=1060867 ACGK9W_RS09935 WP_405420751.1 2121825..2123045(+) (pilC) [Marinobacter flavimaris strain ZYH30]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKVTPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFAGALRKHPKYFDDLYCNLVDSGEKAGALEAMLDRIATYLEKT
EVLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGAELPVFTQMVVGLSEWLQSWWFVVLLGIVGTIFLFK
EAKRRSQKFSDIVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVASGT
QLQASMRQQDLFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKVTPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFAGALRKHPKYFDDLYCNLVDSGEKAGALEAMLDRIATYLEKT
EVLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGAELPVFTQMVVGLSEWLQSWWFVVLLGIVGTIFLFK
EAKRRSQKFSDIVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVASGT
QLQASMRQQDLFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG
Nucleotide
Download Length: 1221 bp
>NTDB_id=1060867 ACGK9W_RS09935 WP_405420751.1 2121825..2123045(+) (pilC) [Marinobacter flavimaris strain ZYH30]
ATGGCAGAGAAAGCACAGAAGCTGGAATCGTACGTTTGGGAAGGGAAAGACAGAAAGGGGAACAAGTCCAAGGGCGAGCT
GACGGGTTCGAACCTTGCACTTGTTAAGGCACAACTTCGGAAGCAAGGCATTATTCCGGATAAGGTCAAGAAAAAGCCAA
AGCCGCTTTTTGGAGGCAGCAAGAAGGTCACGCCCTTCGATATTGCCATGCTGACTCGCCAGCTTGCCACCATGATGAAG
GCGGGTGTACCTTTGGTTCAGAGCTTTGACATTGTTGCTGATGGCCTTGAGAACAAGGGGCTGCAGGAACTGGTTATGAG
TATCCGTAATGATATTTCGTCGGGTACCAGTTTCGCAGGCGCATTGCGCAAACATCCAAAGTATTTTGATGATTTGTATT
GCAACCTGGTGGATTCTGGTGAGAAAGCAGGTGCGCTTGAGGCAATGCTGGATCGCATTGCCACATATCTCGAGAAAACT
GAGGTACTAAAGAAAAAAGTTAAAAAGGCAATGACCTACCCGATTGCCGTTATTGTGGTTGCGATCGTTGTAACTGCCAT
TCTCCTGGTCAAGGTAGTTCCACAATTTGAAAGCTTGTTTCAAGGCTTTGGTGCTGAGCTACCTGTCTTTACCCAGATGG
TTGTAGGACTTTCTGAGTGGCTCCAAAGCTGGTGGTTCGTCGTATTGCTGGGGATTGTGGGTACCATTTTTCTATTCAAA
GAAGCCAAACGTCGCTCGCAGAAGTTTTCAGATATCGTAGACAAATATGTATTGAAACTTCCAATCGTAGGCGAAATTCT
TGATAAATCTGCCGTCGCGAAATTCGGTCGAGTGCTGTCCACCACTTTCGCTGCCGGTGTGCCCCTCGTAGATGCGCTCG
ACTCTGTAGCGGGCGCGACCGGTAATGCGGTTTACCGGGATGCTATCGATCGCATAAAGAACGACGTTGCCAGCGGTACC
CAGTTACAAGCTTCAATGCGGCAACAGGATCTCTTTCCCGTGATGGCCGTCCAATTAACCGCTATTGGCGAGGAATCCGG
TAACCTCGACGAGATGCTGGCCAAGGTGGCGGAGCATTACGAGGCAGTGGTGGACGACATGGTCGATAACCTGACAGCTC
TGATGGAGCCGATGATCATGGCGGTTCTGGGTGTTCTGGTTGGTGGCCTGATCATTGCCATGTATCTGCCCATCTTCCAG
ATGGGTCAGGTTGTTGGTTAA
ATGGCAGAGAAAGCACAGAAGCTGGAATCGTACGTTTGGGAAGGGAAAGACAGAAAGGGGAACAAGTCCAAGGGCGAGCT
GACGGGTTCGAACCTTGCACTTGTTAAGGCACAACTTCGGAAGCAAGGCATTATTCCGGATAAGGTCAAGAAAAAGCCAA
AGCCGCTTTTTGGAGGCAGCAAGAAGGTCACGCCCTTCGATATTGCCATGCTGACTCGCCAGCTTGCCACCATGATGAAG
GCGGGTGTACCTTTGGTTCAGAGCTTTGACATTGTTGCTGATGGCCTTGAGAACAAGGGGCTGCAGGAACTGGTTATGAG
TATCCGTAATGATATTTCGTCGGGTACCAGTTTCGCAGGCGCATTGCGCAAACATCCAAAGTATTTTGATGATTTGTATT
GCAACCTGGTGGATTCTGGTGAGAAAGCAGGTGCGCTTGAGGCAATGCTGGATCGCATTGCCACATATCTCGAGAAAACT
GAGGTACTAAAGAAAAAAGTTAAAAAGGCAATGACCTACCCGATTGCCGTTATTGTGGTTGCGATCGTTGTAACTGCCAT
TCTCCTGGTCAAGGTAGTTCCACAATTTGAAAGCTTGTTTCAAGGCTTTGGTGCTGAGCTACCTGTCTTTACCCAGATGG
TTGTAGGACTTTCTGAGTGGCTCCAAAGCTGGTGGTTCGTCGTATTGCTGGGGATTGTGGGTACCATTTTTCTATTCAAA
GAAGCCAAACGTCGCTCGCAGAAGTTTTCAGATATCGTAGACAAATATGTATTGAAACTTCCAATCGTAGGCGAAATTCT
TGATAAATCTGCCGTCGCGAAATTCGGTCGAGTGCTGTCCACCACTTTCGCTGCCGGTGTGCCCCTCGTAGATGCGCTCG
ACTCTGTAGCGGGCGCGACCGGTAATGCGGTTTACCGGGATGCTATCGATCGCATAAAGAACGACGTTGCCAGCGGTACC
CAGTTACAAGCTTCAATGCGGCAACAGGATCTCTTTCCCGTGATGGCCGTCCAATTAACCGCTATTGGCGAGGAATCCGG
TAACCTCGACGAGATGCTGGCCAAGGTGGCGGAGCATTACGAGGCAGTGGTGGACGACATGGTCGATAACCTGACAGCTC
TGATGGAGCCGATGATCATGGCGGTTCTGGGTGTTCTGGTTGGTGGCCTGATCATTGCCATGTATCTGCCCATCTTCCAG
ATGGGTCAGGTTGTTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
67.16 |
99.754 |
0.67 |
| pilC | Acinetobacter baumannii D1279779 |
59.259 |
99.754 |
0.591 |
| pilC | Acinetobacter baylyi ADP1 |
59.113 |
100 |
0.591 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.956 |
100 |
0.53 |
| pilG | Neisseria gonorrhoeae MS11 |
43.951 |
99.754 |
0.438 |
| pilG | Neisseria meningitidis 44/76-A |
43.596 |
100 |
0.436 |
| pilC | Vibrio cholerae strain A1552 |
40.887 |
100 |
0.409 |
| pilC | Vibrio campbellii strain DS40M4 |
40.295 |
100 |
0.404 |