Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACFKHJ_RS00440 Genome accession   NZ_CP170759
Coordinates   76269..77450 (+) Length   393 a.a.
NCBI ID   WP_239604415.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 71269..82450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS00425 mutL 72035..73972 (+) 1938 WP_171989052.1 DNA mismatch repair endonuclease MutL -
  ACFKHJ_RS00430 ruvA 74218..74808 (+) 591 WP_171989013.1 Holliday junction branch migration protein RuvA -
  ACFKHJ_RS00435 - 75663..76232 (+) 570 WP_392452719.1 DNA-3-methyladenine glycosylase I -
  ACFKHJ_RS00440 cinA 76269..77450 (+) 1182 WP_239604415.1 competence/damage-inducible protein A Machinery gene
  ACFKHJ_RS00445 recA 77502..78656 (+) 1155 WP_174846500.1 recombinase RecA Machinery gene
  ACFKHJ_RS00450 spx 78870..79268 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  ACFKHJ_RS00455 - 79378..79644 (+) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  ACFKHJ_RS00460 ruvX 79644..80063 (+) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  ACFKHJ_RS00465 - 80075..80395 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  ACFKHJ_RS00470 - 80724..81272 (+) 549 WP_174846502.1 nucleotidyltransferase family protein -
  ACFKHJ_RS00475 comX/sigX 81454..81924 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42738.67 Da        Isoelectric Point: 4.5002

>NTDB_id=1059185 ACFKHJ_RS00440 WP_239604415.1 76269..77450(+) (cinA) [Streptococcus parasuis strain FZ1]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSDLVILCGGLGPTEDDLTKQT
LATFLQKELVADELAMAKLDRFFASRPGRVRTHNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPFLTQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKADSQEEANVRLNQLEEE
ILQRDHLRVFFYAYGDDNSLVKTVATLLEEKKQSLGILENGTGGLLQAELSLALAGQPYYSGGKIIGQLGTESGGLSEEA
SRIREELQADLGLVVSVAVKPESTVDNVLAKVYLALASTSGISKKEVDLGGYSWQYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1059185 ACFKHJ_RS00440 WP_239604415.1 76269..77450(+) (cinA) [Streptococcus parasuis strain FZ1]
ATGAAAGCAGAATTAATTGCTGTTGGAACAGAAATATTGACAGGTCAAATTGTGAATACGAATGCTCAATTCTTGTCAGA
AAAATGTGCAGAGCTAGGTATTGATGTATACTTCCACACTGCTGTAGGTGATAATGAACAGCGACTATTGTCTGTGCTTG
AAATTGCAAGTAAACGAAGTGATCTGGTCATTTTATGTGGTGGTTTAGGTCCTACTGAAGACGACTTGACTAAGCAAACT
TTAGCGACATTTTTGCAAAAAGAGTTGGTTGCTGACGAACTAGCGATGGCAAAATTAGACCGTTTTTTTGCCAGTCGACC
AGGTCGTGTTCGCACACATAATAATGAGCGTCAAGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAACCCAGCTGGTT
TAGCTGTAGGTGGTATGATTGAGCAAGATGGTGTGACCTATATTGTTTTGCCTGGCCCACCAAGTGAACTCAAGGCCATG
TTTTCTGAGAGTCTGTTACCTTTTTTGACTCAATCTCAGCAACAACTTTACTCGCGTGTCCTACGCTTTTTTGGAATAGG
TGAAAGCCAGTTGGTGACTGTTTTAGCGGATTTGATTGACAAGCAGACAGACCCGACTCTTGCGCCTTATGCAAAAGTTG
GAGAGGTGACGCTTCGTTTATCTACGAAGGCAGATAGCCAGGAAGAAGCGAACGTTCGTTTGAATCAGTTGGAAGAAGAG
ATATTGCAACGTGACCACTTGAGAGTTTTTTTCTATGCATATGGGGATGACAATAGTTTGGTTAAAACCGTAGCGACTCT
TTTAGAGGAAAAGAAACAATCTTTGGGCATCCTAGAGAATGGAACAGGTGGTTTATTACAAGCAGAATTGAGTCTGGCTT
TGGCTGGTCAGCCGTATTATAGTGGAGGAAAAATCATCGGTCAGCTAGGGACAGAATCGGGCGGGCTATCAGAAGAAGCA
AGTCGCATTCGGGAGGAACTACAAGCTGATTTAGGGCTAGTTGTGTCGGTGGCGGTCAAACCAGAATCAACAGTAGACAA
CGTACTTGCTAAAGTATATCTAGCCTTGGCCAGTACCTCGGGTATTTCCAAAAAAGAGGTAGATTTAGGAGGTTATTCAT
GGCAATACCTTCGTCAACTTGCTTGTTTACAGGCGTTAGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

87.023

100

0.87
  cinA Streptococcus mitis SK321

55.288

100

0.585
  cinA Streptococcus mitis NCTC 12261

55.048

100

0.583
  cinA Streptococcus pneumoniae TIGR4

54.808

100

0.58
  cinA Streptococcus pneumoniae Rx1

54.808

100

0.58
  cinA Streptococcus pneumoniae R6

54.808

100

0.58
  cinA Streptococcus pneumoniae D39

54.567

100

0.578
  cinA Streptococcus mutans UA159

54.988

100

0.575
  cinA Bacillus subtilis subsp. subtilis str. 168

46.906

78.117

0.366

Multiple sequence alignment