Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DK42_RS03405 Genome accession   NZ_CP007571
Coordinates   613456..613635 (+) Length   59 a.a.
NCBI ID   WP_000965654.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 608456..618635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS03375 (DK42_03470) - 608645..610630 (+) 1986 WP_000214864.1 DUF859 family phage minor structural protein -
  DK42_RS03380 (DK42_03475) - 610656..610985 (+) 330 WP_000494205.1 DUF1366 domain-containing protein -
  DK42_RS03385 (DK42_03480) - 610960..611172 (+) 213 WP_000698337.1 hypothetical protein -
  DK42_RS03390 (DK42_03485) - 611185..611487 (+) 303 WP_000215499.1 hypothetical protein -
  DK42_RS03395 (DK42_03490) - 611489..611824 (+) 336 WP_001001961.1 phage holin -
  DK42_RS03400 (DK42_03495) - 611826..612545 (+) 720 WP_000236382.1 peptidoglycan amidohydrolase family protein -
  DK42_RS11800 - 612868..613038 (-) 171 WP_000356856.1 hypothetical protein -
  DK42_RS12050 - 613174..613299 (-) 126 WP_017285425.1 hypothetical protein -
  DK42_RS03405 (DK42_03510) prx 613456..613635 (+) 180 WP_000965654.1 hypothetical protein Regulator
  DK42_RS03410 (DK42_03515) - 613735..614316 (-) 582 WP_025193995.1 site-specific integrase -
  DK42_RS03415 (DK42_03520) - 614352..614618 (-) 267 WP_001881173.1 hypothetical protein -
  DK42_RS11915 - 614639..616001 (+) 1363 Protein_599 IS3 family transposase -
  DK42_RS11185 - 616174..616335 (-) 162 WP_000508795.1 NINE protein -
  DK42_RS03435 (DK42_03540) - 617078..618355 (+) 1278 WP_000594360.1 ABC transporter permease -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6909.89 Da        Isoelectric Point: 4.3219

>NTDB_id=105907 DK42_RS03405 WP_000965654.1 613456..613635(+) (prx) [Streptococcus agalactiae strain GBS2-NM]
MLYIDELQEAIDKGYISGNTVAIVRKNGKIFDYVLPHEEVREEEVVTVERVEDVMRELK

Nucleotide


Download         Length: 180 bp        

>NTDB_id=105907 DK42_RS03405 WP_000965654.1 613456..613635(+) (prx) [Streptococcus agalactiae strain GBS2-NM]
ATGTTATATATAGATGAGCTACAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGTGCGTAAGAA
CGGAAAGATATTTGATTATGTGTTACCACACGAAGAAGTGAGAGAAGAAGAGGTTGTGACAGTTGAGAGAGTGGAAGACG
TTATGAGAGAATTGAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

70.69

98.305

0.695
  prx Streptococcus pyogenes MGAS8232

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS315

67.241

98.305

0.661
  prx Streptococcus pyogenes MGAS315

83.721

72.881

0.61
  prx Streptococcus pyogenes MGAS315

60.345

98.305

0.593
  prx Streptococcus pyogenes MGAS315

73.171

69.492

0.508
  prx Streptococcus pyogenes MGAS315

69.767

72.881

0.508

Multiple sequence alignment