Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACE83Q_RS03900 Genome accession   NZ_CP170736
Coordinates   781005..782246 (-) Length   413 a.a.
NCBI ID   WP_409021450.1    Uniprot ID   -
Organism   Dellaglioa sp. P0083     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 776005..787246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE83Q_RS03890 (ACE83Q_03895) - 778374..779174 (-) 801 WP_409021448.1 TIGR00282 family metallophosphoesterase -
  ACE83Q_RS03895 (ACE83Q_03900) rny 779275..780849 (-) 1575 WP_409021449.1 ribonuclease Y -
  ACE83Q_RS03900 (ACE83Q_03905) cinA 781005..782246 (-) 1242 WP_409021450.1 competence/damage-inducible protein A Machinery gene
  ACE83Q_RS03905 (ACE83Q_03910) pgsA 782311..782898 (-) 588 WP_409021451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACE83Q_RS03910 (ACE83Q_03915) - 782958..783800 (-) 843 WP_409021452.1 helix-turn-helix domain-containing protein -
  ACE83Q_RS03915 (ACE83Q_03920) ymfI 783889..784611 (-) 723 WP_409021453.1 elongation factor P 5-aminopentanone reductase -
  ACE83Q_RS03920 (ACE83Q_03925) yfmH 784612..785916 (-) 1305 WP_409021454.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACE83Q_RS03925 (ACE83Q_03930) yfmF 785916..787169 (-) 1254 WP_409021455.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45598.85 Da        Isoelectric Point: 4.7269

>NTDB_id=1059002 ACE83Q_RS03900 WP_409021450.1 781005..782246(-) (cinA) [Dellaglioa sp. P0083]
MHAEIIAVGTEILLGQIVNTNSAFLAEKLADLGVNVFYQTVVGDNEERMLEAIELASKRNDLVILSGGLGPTEDDLTKQM
VAKFLNEKLVENKDAMSKIEDHFTQTGRQMTENNKLQALYIEGSKPIKNHAGMAVGDFYKGDSCDFLLLPGPPKELKTMF
NKEVEHLLKEEYNLNSHLESKVLRFYGIGESKLVTELKEIIDSQTNPTIAPYAKTNEVTLRITASATDDKSAVELINEME
IHVLSKVGDYFYGYGDDNSLKNVVVTKLIEKDLSISASESLTAGLFQSTLAEIPGVSKIYDGGYITYANTAKSDILGISP
EDIKKYGVVSEETAKQMAQQTQNKMKTDIAISFTGVAGPDELENQKAGTVWIGLAIKNSPIIAKQFHFAGNRETIRQRSV
LSGLKWIFDEINE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1059002 ACE83Q_RS03900 WP_409021450.1 781005..782246(-) (cinA) [Dellaglioa sp. P0083]
ATGCATGCAGAAATAATTGCGGTTGGTACAGAAATATTATTAGGACAAATTGTAAATACGAACAGTGCTTTCTTAGCTGA
AAAATTAGCTGATTTAGGTGTAAATGTATTTTATCAGACAGTTGTAGGGGATAATGAAGAACGAATGTTAGAGGCAATTG
AATTGGCTTCAAAACGAAATGATTTAGTTATTCTTTCTGGGGGCCTAGGACCAACAGAAGATGACTTAACGAAACAGATG
GTCGCCAAATTTTTAAATGAAAAGTTAGTTGAAAATAAGGATGCTATGTCAAAGATAGAAGATCATTTTACACAAACGGG
TCGTCAAATGACTGAAAATAATAAATTACAAGCTTTGTATATAGAAGGATCGAAACCAATTAAAAATCATGCTGGAATGG
CTGTTGGTGATTTTTACAAGGGTGATTCCTGCGATTTCTTATTATTACCCGGACCACCTAAGGAATTAAAAACAATGTTT
AATAAAGAAGTTGAACATCTATTAAAAGAGGAATACAACTTAAATAGTCATCTTGAATCAAAGGTTTTACGATTTTATGG
AATTGGTGAATCTAAATTGGTGACAGAATTAAAAGAGATCATTGACTCACAAACAAATCCTACTATTGCTCCATATGCCA
AGACAAATGAGGTCACTTTGCGAATTACGGCAAGCGCTACAGATGACAAGTCAGCTGTAGAATTAATTAACGAAATGGAG
ATTCATGTACTATCTAAAGTTGGTGATTATTTCTATGGTTACGGGGATGACAATTCGTTAAAAAATGTTGTTGTGACTAA
ATTAATTGAAAAAGACTTATCTATTTCTGCATCCGAAAGTTTAACAGCTGGATTATTCCAAAGTACGTTAGCAGAAATAC
CAGGTGTCTCAAAAATTTATGATGGTGGATATATAACATATGCTAATACAGCCAAGTCTGATATTTTAGGTATTTCGCCT
GAAGATATTAAAAAATATGGTGTTGTTAGTGAAGAAACAGCTAAACAAATGGCTCAACAAACACAAAACAAAATGAAAAC
TGATATTGCTATTTCATTTACTGGTGTTGCAGGTCCAGATGAGCTTGAAAATCAGAAAGCTGGGACGGTTTGGATTGGAT
TAGCAATTAAAAATAGCCCTATTATTGCAAAACAATTTCATTTTGCTGGAAATAGAGAGACAATTAGACAAAGAAGTGTT
CTAAGTGGGCTTAAATGGATATTTGATGAAATTAATGAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

50.244

99.274

0.499
  cinA Streptococcus mitis SK321

48.077

100

0.484
  cinA Streptococcus pneumoniae TIGR4

47.596

100

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.768

98.305

0.479
  cinA Streptococcus mitis NCTC 12261

47.356

100

0.477
  cinA Streptococcus pneumoniae Rx1

47.115

100

0.475
  cinA Streptococcus pneumoniae R6

47.115

100

0.475
  cinA Streptococcus pneumoniae D39

46.875

100

0.472
  cinA Streptococcus suis isolate S10

42.718

99.758

0.426

Multiple sequence alignment