Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACFW98_RS02350 Genome accession   NZ_CP170719
Coordinates   490386..491636 (+) Length   416 a.a.
NCBI ID   WP_015417497.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 485386..496636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS02320 (ACFW98_02320) yfmH 485474..486760 (+) 1287 WP_064115446.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACFW98_RS02325 (ACFW98_02325) ymfI 486820..487548 (+) 729 WP_039251477.1 elongation factor P 5-aminopentanone reductase -
  ACFW98_RS02330 (ACFW98_02330) - 487623..487880 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  ACFW98_RS02335 (ACFW98_02335) - 488008..488799 (+) 792 WP_007409819.1 YmfK family protein -
  ACFW98_RS02340 (ACFW98_02340) - 488818..489714 (+) 897 WP_007409820.1 RodZ domain-containing protein -
  ACFW98_RS02345 (ACFW98_02345) pgsA 489787..490368 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFW98_RS02350 (ACFW98_02350) cinA 490386..491636 (+) 1251 WP_015417497.1 competence/damage-inducible protein A Machinery gene
  ACFW98_RS02355 (ACFW98_02355) recA 491807..492850 (+) 1044 WP_060675476.1 recombinase RecA Machinery gene
  ACFW98_RS02360 (ACFW98_02360) - 493018..494199 (+) 1182 WP_012117582.1 serine hydrolase -
  ACFW98_RS02365 (ACFW98_02365) rny 494492..496051 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45024.30 Da        Isoelectric Point: 5.1492

>NTDB_id=1058709 ACFW98_RS02350 WP_015417497.1 490386..491636(+) (cinA) [Bacillus amyloliquefaciens strain JP5008]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKRLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1058709 ACFW98_RS02350 WP_015417497.1 490386..491636(+) (cinA) [Bacillus amyloliquefaciens strain JP5008]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTGAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAGGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment