Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFJIX_RS11650 Genome accession   NZ_CP170545
Coordinates   2526008..2527243 (-) Length   411 a.a.
NCBI ID   WP_377160151.1    Uniprot ID   -
Organism   Roseateles sp. UC29_93     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2521008..2532243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIX_RS11620 (ACFJIX_11620) pgi 2521031..2522659 (+) 1629 WP_377160141.1 glucose-6-phosphate isomerase -
  ACFJIX_RS11625 (ACFJIX_11625) - 2522699..2523319 (+) 621 WP_377160143.1 HAD family hydrolase -
  ACFJIX_RS11630 (ACFJIX_11630) - 2523358..2523567 (-) 210 WP_377160145.1 DNA gyrase inhibitor YacG -
  ACFJIX_RS11635 (ACFJIX_11635) zapD 2523624..2524379 (-) 756 WP_088407952.1 cell division protein ZapD -
  ACFJIX_RS11640 (ACFJIX_11640) coaE 2524450..2525043 (-) 594 WP_377160147.1 dephospho-CoA kinase -
  ACFJIX_RS11645 (ACFJIX_11645) - 2525063..2526007 (-) 945 WP_377160149.1 prepilin peptidase -
  ACFJIX_RS11650 (ACFJIX_11650) pilC 2526008..2527243 (-) 1236 WP_377160151.1 type II secretion system F family protein Machinery gene
  ACFJIX_RS11655 (ACFJIX_11655) pilB 2527369..2529103 (-) 1735 Protein_2296 type IV-A pilus assembly ATPase PilB -
  ACFJIX_RS11665 (ACFJIX_11665) - 2529494..2530441 (-) 948 Protein_2297 polyprenyl synthetase family protein -
  ACFJIX_RS11670 (ACFJIX_11670) rplU 2530816..2531127 (+) 312 WP_297531896.1 50S ribosomal protein L21 -
  ACFJIX_RS11675 (ACFJIX_11675) rpmA 2531166..2531423 (+) 258 WP_088407914.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44790.71 Da        Isoelectric Point: 9.9788

>NTDB_id=1057883 ACFJIX_RS11650 WP_377160151.1 2526008..2527243(-) (pilC) [Roseateles sp. UC29_93]
MATTTAGAKSAAKGIKEYVFEWEGKDRNGKIVRGEMRAGGEAVISASLRRQGILVSKIKKRRSSGGKSIKQKDISVFTRQ
LATMMRAGVPLLQSFDIVARGSPNPRLTKLLTDIRQDVETGTSLSAAFRKHPLYFDALYCNLVEAGEQGGILEALLDRLA
IYQEKTVALKGKIKSALTYPIAVLIVAFVVTAVIMIFVIPAFKDVFKSFGADLPAPTLFVMAMSEIFVAYWWLIFGVIGG
GLYFFFQSWKRSEKMQKFMDRLLLKIPVFGQLIYKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFVEATEKIQR
DVSTGASLTTSMQTTGIFPIMVLQMSSIGEESGSLDHMLGKAADFYEEEVDDAVKALSSLMEPIIIVFLGTLIGGIVISM
YLPIFKLGAVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1057883 ACFJIX_RS11650 WP_377160151.1 2526008..2527243(-) (pilC) [Roseateles sp. UC29_93]
ATGGCGACGACCACCGCAGGCGCCAAGAGCGCGGCCAAGGGCATCAAGGAATACGTCTTCGAATGGGAAGGCAAGGACCG
CAACGGCAAGATCGTTCGCGGAGAGATGCGGGCCGGCGGCGAAGCCGTCATCAGCGCGTCGCTGCGGCGCCAGGGCATCC
TGGTCAGCAAGATCAAGAAGCGGCGCAGCTCCGGCGGCAAGTCCATCAAGCAGAAGGACATCTCGGTCTTCACACGTCAG
CTCGCGACGATGATGCGCGCGGGCGTCCCGCTGCTGCAGTCGTTCGACATCGTCGCCCGCGGCAGCCCGAATCCCCGCCT
GACCAAGCTGCTGACCGACATCCGTCAGGACGTCGAGACCGGCACTTCGCTGTCGGCCGCTTTCCGCAAGCACCCGCTCT
ACTTCGACGCGCTGTACTGCAACCTGGTCGAGGCCGGCGAGCAGGGCGGTATCCTGGAAGCCCTGCTGGACCGTCTGGCG
ATCTACCAGGAAAAGACCGTTGCGTTGAAGGGCAAGATCAAGTCGGCCCTGACCTACCCGATCGCGGTGCTGATCGTGGC
CTTCGTCGTGACGGCCGTGATCATGATCTTCGTGATCCCGGCCTTCAAGGACGTGTTCAAGTCCTTCGGTGCTGACCTCC
CGGCTCCGACGCTGTTCGTGATGGCGATGTCGGAGATCTTCGTCGCGTACTGGTGGCTGATCTTCGGCGTCATCGGCGGT
GGCCTGTACTTCTTCTTCCAGAGCTGGAAACGCTCGGAGAAGATGCAGAAGTTCATGGACCGGCTCCTGCTGAAAATCCC
GGTGTTCGGCCAGTTGATCTACAAGTCGGCGGTCGCACGTTGGACACGCACGCTGGCAACGATGTTCGCCGCGGGCGTGC
CGCTGGTGGAGGCCCTGGACTCGGTGGGGGGCGCTTCCGGCAATGCGGTATTCGTCGAGGCGACCGAAAAGATCCAGCGC
GACGTGTCGACCGGCGCTTCGCTGACCACATCGATGCAGACGACCGGCATCTTCCCGATCATGGTCCTGCAGATGTCGTC
GATCGGCGAGGAATCCGGCTCGCTGGACCACATGCTGGGCAAGGCGGCCGACTTCTATGAGGAAGAGGTGGATGACGCCG
TCAAGGCGCTGTCCAGCCTGATGGAACCCATCATCATCGTGTTCCTGGGCACGTTGATCGGCGGCATCGTGATCTCGATG
TACCTGCCGATCTTCAAGTTGGGCGCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

98.297

0.552
  pilG Neisseria meningitidis 44/76-A

53.652

96.594

0.518
  pilG Neisseria gonorrhoeae MS11

53.652

96.594

0.518
  pilC Legionella pneumophila strain ERS1305867

52.273

96.35

0.504
  pilC Acinetobacter baylyi ADP1

50

96.837

0.484
  pilC Acinetobacter baumannii D1279779

49.622

96.594

0.479
  pilC Vibrio cholerae strain A1552

41.667

96.35

0.401
  pilC Vibrio campbellii strain DS40M4

39.563

100

0.397
  pilC Thermus thermophilus HB27

39.098

97.08

0.38

Multiple sequence alignment