Detailed information NTG1057784

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACFJY4_RS17220
• Genome accession: NZ_CP170500
• Coordinates: 3651769..3652986 (-)
• Length: 405 a.a.
• NCBI ID: WP_351157777.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain MBI-RS3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3649851..3650831	3651769..3652986	flank	938

Gene organization within MGE regions

Location: 3649851..3652986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFJY4_RS17210 (ACFJY4_17205)	-	3649851..3650831 (-)	981	WP_058131641.1	IS5-like element ISPa16 family transposase	-
ACFJY4_RS17215 (ACFJY4_17210)	pilD	3650897..3651766 (-)	870	WP_017246372.1	A24 family peptidase	Machinery gene
ACFJY4_RS17220 (ACFJY4_17215)	pilC	3651769..3652986 (-)	1218	WP_351157777.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 43919.62 Da
• Isoelectric Point: 9.9279

>NTDB_id=1057784 ACFJY4_RS17220 WP_351157777.1 3651769..3652986(-) (pilC) [Stutzerimonas stutzeri strain MBI-RS3]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGISPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLFVIGISEALQAWWHLVLLALVGAAYAFK
TAHGKSERFRNSFDRFLLKMPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATLKVKSDVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide

• Length: 1218 bp

>NTDB_id=1057784 ACFJY4_RS17220 WP_351157777.1 3651769..3652986(-) (pilC) [Stutzerimonas stutzeri strain MBI-RS3]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGTGCGAAGATCAAGGGCGAGCT
AAGCGGGATCAGCCCTGCGATGGTCAAGGCGCAGCTGCGTAAGCAGGGCGTAAACCCTCAGAAGGTGCGTAAGAAGTCGG
CGTCGCTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACTCGTCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCATTCGACATTATTGGCGAGGGGTTCGATAACCCGAACATGCGTAAGCTGGTCGATGA
TCTCAAGCAGGAGGTCGCGGCGGGTAACAGTTTCGCCACTGCGTTGCGCAAGAAGCCGCAGTACTTTGACGATCTCTACT
GCAACCTGGTGGACTCCGGGGAGCAGTCTGGTTCCTTGGAGACGTTGCTCGATCGCGTTGCAACCTACAAGGAAAAAACC
GAGGCCCTAAAGGCCAAGATCAAGAAGGCGATGAATTACCCCATTGCCGTGGTGCTGGTTGCAATCATCGTTTCGGCGAT
TCTGCTGATCAAGGTGGTTCCACAGTTTCAGGATGTATTCGCGAACTTCGGTGCAGAGCTTCCGGCATTCACATTGTTTG
TGATTGGCATATCCGAAGCGCTTCAGGCTTGGTGGCATCTGGTTTTGCTGGCGTTGGTCGGTGCTGCCTATGCCTTCAAG
ACTGCTCACGGCAAGTCCGAGCGCTTTCGTAACTCGTTTGACAGGTTTCTTCTTAAAATGCCAATCGTCGGAGATATTCT
CTATAAATCTGCTGTTGCGCGTTTTGCTCGCACCTTAGCTACGACCTTTGCCGCAGGCGTGCCGTTAGTGGACGCGTTAG
ATTCAGTTGCGGGCGCGACAGGTAACGTGGTTTTCCGTAACGCCACGCTGAAGGTAAAGAGCGATGTTTCTAGCGGTATG
CAGCTGAACTTCTCCATGCGCACGACGGGTACTTTTCCGAGCATGGCGATCCAGATGACTGCCATTGGCGAGGAATCCGG
CTCGCTGGATGAAATGCTAGCTAAGGTCGCGACCTTCTATGAAGACGAAGTTGACAATATGGTCGACGGGCTGACTGCCT
TGATGGAGCCAATGATCATGGCGGTGCTTGGCGTGCTGGTCGGCGGTTTGATCATTGCCATGTACCTGCCGATTTTCCAA
CTGGGCGCTGTGGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	90.617	100	0.906
pilC	Acinetobacter baylyi ADP1	59.36	100	0.595
pilC	Acinetobacter baumannii D1279779	58.272	100	0.583
pilC	Legionella pneumophila strain ERS1305867	53.535	97.778	0.523
pilG	Neisseria gonorrhoeae MS11	46.154	99.506	0.459
pilG	Neisseria meningitidis 44/76-A	46.154	99.506	0.459
pilC	Vibrio cholerae strain A1552	42.929	97.778	0.42
pilC	Vibrio campbellii strain DS40M4	41.162	97.778	0.402
pilC	Thermus thermophilus HB27	36.658	99.012	0.363