Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFIOZ_RS10050 Genome accession   NZ_CP170448
Coordinates   2224562..2225794 (-) Length   410 a.a.
NCBI ID   WP_386083669.1    Uniprot ID   -
Organism   Vreelandella sp. F11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2219562..2230794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOZ_RS10015 (ACFIOZ_10015) - 2219764..2220138 (+) 375 WP_386083654.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  ACFIOZ_RS10020 (ACFIOZ_10020) - 2220229..2221059 (-) 831 WP_386083655.1 helix-turn-helix domain-containing protein -
  ACFIOZ_RS10025 (ACFIOZ_10025) - 2221435..2221803 (+) 369 WP_386083657.1 hypothetical protein -
  ACFIOZ_RS10030 (ACFIOZ_10030) - 2221831..2222718 (-) 888 WP_386083660.1 DNA replication terminus site-binding protein -
  ACFIOZ_RS10035 (ACFIOZ_10035) yacG 2222758..2222991 (-) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  ACFIOZ_RS10040 (ACFIOZ_10040) coaE 2223026..2223628 (-) 603 WP_386083664.1 dephospho-CoA kinase -
  ACFIOZ_RS10045 (ACFIOZ_10045) - 2223698..2224543 (-) 846 WP_386083666.1 prepilin peptidase -
  ACFIOZ_RS10050 (ACFIOZ_10050) pilC 2224562..2225794 (-) 1233 WP_386083669.1 type II secretion system F family protein Machinery gene
  ACFIOZ_RS10055 (ACFIOZ_10055) pilB 2225798..2227546 (-) 1749 WP_386083670.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFIOZ_RS10060 (ACFIOZ_10060) - 2227787..2228281 (+) 495 WP_386083672.1 pilin -
  ACFIOZ_RS10065 (ACFIOZ_10065) - 2228415..2228849 (+) 435 WP_386083674.1 anti-virulence regulator CigR family protein -
  ACFIOZ_RS10070 (ACFIOZ_10070) - 2228944..2229765 (+) 822 WP_386083676.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44909.84 Da        Isoelectric Point: 10.5176

>NTDB_id=1057494 ACFIOZ_RS10050 WP_386083669.1 2224562..2225794(-) (pilC) [Vreelandella sp. F11]
MAKTARRRQTPAIRLSRWKWSGKGPQDRPLSGEMIGRSKAEVAAELTKQHIVIRRISKKGNLGGSGRIKPYDVMVFVRQM
ATMTRAGIPLLQALQVVAESLKKPAMVALVQHMMSDISSGASFSDALNRHPKHFDRLFVKIVNAGEQSGALDQMLDRIAT
YKEKVESLKARVKKALWYPTAVMTIGIAVTLLLLIRVVPEFESMFQSFGAELPALTQLTVNLSELAQRYWLAALGAVMAA
VLLLKISIQRSPSVAYRMHALLLRLPVIGDIMHKSAIARFSRTLATTFASGVPLVEGLDTAAGATGNKVYERAVAQTRQD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDAMLNRVADYYEEEVDNKVDALTSLMEPIIIVVLGVLVGGVVVSMY
LPIFDLGSAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1057494 ACFIOZ_RS10050 WP_386083669.1 2224562..2225794(-) (pilC) [Vreelandella sp. F11]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAGGCTATCGCGCTGGAAATGGAGTGGTAAAGGCCCCCAGGA
TAGACCGCTTAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTGAACTCACCAAGCAACATATCGTTATCC
GCCGGATTAGTAAAAAAGGCAACCTCGGCGGCAGTGGCCGCATTAAACCCTACGATGTCATGGTCTTTGTGCGTCAAATG
GCCACCATGACTCGTGCTGGCATACCGTTGCTGCAAGCACTTCAAGTAGTAGCAGAGAGCCTCAAAAAACCGGCTATGGT
TGCCCTTGTTCAGCATATGATGAGCGATATATCGTCGGGTGCCAGCTTCTCAGACGCATTGAACCGTCACCCCAAACACT
TTGATCGACTGTTTGTTAAGATTGTCAATGCTGGTGAGCAGTCCGGTGCGCTGGATCAAATGCTCGATCGTATTGCGACC
TATAAAGAGAAGGTTGAGTCGCTGAAAGCGCGGGTTAAGAAGGCCCTTTGGTACCCCACCGCCGTTATGACGATAGGCAT
TGCAGTGACCCTATTGCTGTTGATTAGAGTGGTGCCTGAATTTGAAAGCATGTTCCAAAGCTTTGGCGCTGAACTCCCTG
CACTGACCCAACTGACCGTGAACTTATCCGAGCTTGCCCAGCGTTATTGGCTAGCCGCGCTCGGCGCAGTGATGGCTGCC
GTGCTTTTGCTTAAAATAAGCATTCAACGCTCGCCAAGCGTTGCTTACCGTATGCATGCACTGCTGCTTCGCTTGCCGGT
CATTGGCGATATTATGCATAAATCCGCCATTGCCCGTTTTTCGCGTACATTAGCGACCACCTTTGCCTCTGGTGTACCAC
TTGTTGAAGGCTTAGACACCGCCGCCGGTGCCACAGGCAATAAAGTGTACGAGCGCGCGGTGGCACAAACGCGCCAAGAC
GTAGCCACCGGGCAACAGCTACACTTCGCCATGCGTATGACCAACCGCTTCCCCCCTTTAGCGATTCAAATGGTCAGCAT
TGGTGAAGAGGCAGGGTCGCTTGATGCCATGCTCAATCGCGTGGCTGATTACTATGAAGAGGAAGTCGATAATAAGGTCG
ACGCCCTCACTTCGCTGATGGAACCGATTATTATCGTGGTACTGGGTGTGCTGGTCGGCGGCGTGGTGGTCTCTATGTAC
TTGCCCATCTTCGACTTGGGCTCTGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

49.622

96.829

0.48
  pilC Pseudomonas stutzeri DSM 10701

49.123

97.317

0.478
  pilC Acinetobacter baumannii D1279779

48.866

96.829

0.473
  pilC Legionella pneumophila strain ERS1305867

48.12

97.317

0.468
  pilC Vibrio campbellii strain DS40M4

43.243

99.268

0.429
  pilC Vibrio cholerae strain A1552

42.998

99.268

0.427
  pilG Neisseria gonorrhoeae MS11

42.172

96.585

0.407
  pilG Neisseria meningitidis 44/76-A

42.172

96.585

0.407

Multiple sequence alignment