Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACFDHX_RS05020 Genome accession   NZ_CP170218
Coordinates   989688..990008 (-) Length   106 a.a.
NCBI ID   WP_107632995.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC392     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984688..995008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHX_RS04990 (ACFDHX_04995) gcvPA 985296..986645 (-) 1350 WP_107632991.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACFDHX_RS04995 (ACFDHX_05000) gcvT 986657..987748 (-) 1092 WP_107632992.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFDHX_RS05000 (ACFDHX_05005) - 987903..988433 (-) 531 WP_107632993.1 shikimate kinase -
  ACFDHX_RS05005 (ACFDHX_05010) - 988411..988608 (-) 198 WP_039645590.1 hypothetical protein -
  ACFDHX_RS05010 (ACFDHX_05015) - 988592..989074 (-) 483 WP_039645587.1 competence type IV pilus minor pilin ComGF -
  ACFDHX_RS05015 (ACFDHX_05020) comGD 989267..989698 (-) 432 WP_209260663.1 competence type IV pilus minor pilin ComGD -
  ACFDHX_RS05020 (ACFDHX_05025) comGC 989688..990008 (-) 321 WP_107632995.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFDHX_RS05025 (ACFDHX_05030) comGB 990020..991087 (-) 1068 WP_119635812.1 competence type IV pilus assembly protein ComGB -
  ACFDHX_RS05030 (ACFDHX_05035) comGA 991056..992030 (-) 975 WP_257070565.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFDHX_RS05035 (ACFDHX_05040) - 992086..992709 (-) 624 WP_107632997.1 MBL fold metallo-hydrolase -
  ACFDHX_RS05040 (ACFDHX_05045) - 992724..993035 (-) 312 WP_039645576.1 MTH1187 family thiamine-binding protein -
  ACFDHX_RS05045 (ACFDHX_05050) - 993037..994023 (-) 987 WP_039645573.1 ROK family glucokinase -
  ACFDHX_RS05050 (ACFDHX_05055) - 994020..994223 (-) 204 WP_039645571.1 YqgQ family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11824.09 Da        Isoelectric Point: 9.5056

>NTDB_id=1055584 ACFDHX_RS05020 WP_107632995.1 989688..990008(-) (comGC) [Staphylococcus hyicus strain SC392]
MLKIINILKNKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKLVDSQIEAYTLKYNRKPTSIDELIQE
GYIKDNQKNCKSGETITIRGGEAVVS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=1055584 ACFDHX_RS05020 WP_107632995.1 989688..990008(-) (comGC) [Staphylococcus hyicus strain SC392]
ATGCTTAAGATCATTAATATATTAAAAAACAAAAAAGGGTTTACTTTAATCGAAATGTTATTGGTTTTACTCATCATTAG
TGTTTTATTAATATTAATAATTCCTAATATAGCCAAACAATCTGATCACATTCAAAAGACTGGATGCGCAGCACAACTTA
AACTCGTAGACAGTCAAATTGAAGCTTACACTTTAAAATACAACCGTAAGCCAACATCAATTGATGAGCTAATTCAAGAA
GGATATATTAAAGATAATCAAAAAAACTGTAAAAGTGGGGAAACTATCACAATTCGTGGTGGCGAAGCTGTTGTCTCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

68.932

97.17

0.67
  comGC Staphylococcus aureus MW2

68.932

97.17

0.67
  comGC Bacillus subtilis subsp. subtilis str. 168

44.33

91.509

0.406
  comGC/cglC Streptococcus mitis SK321

46.067

83.962

0.387
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

83.962

0.387
  comYC Streptococcus suis isolate S10

52.632

71.698

0.377
  comGC/cglC Streptococcus pneumoniae D39

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae R6

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae TIGR4

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

83.962

0.377

Multiple sequence alignment