Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ACFDHX_RS05030 | Genome accession | NZ_CP170218 |
| Coordinates | 991056..992030 (-) | Length | 324 a.a. |
| NCBI ID | WP_257070565.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain SC392 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 986056..997030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDHX_RS04995 (ACFDHX_05000) | gcvT | 986657..987748 (-) | 1092 | WP_107632992.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFDHX_RS05000 (ACFDHX_05005) | - | 987903..988433 (-) | 531 | WP_107632993.1 | shikimate kinase | - |
| ACFDHX_RS05005 (ACFDHX_05010) | - | 988411..988608 (-) | 198 | WP_039645590.1 | hypothetical protein | - |
| ACFDHX_RS05010 (ACFDHX_05015) | - | 988592..989074 (-) | 483 | WP_039645587.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDHX_RS05015 (ACFDHX_05020) | comGD | 989267..989698 (-) | 432 | WP_209260663.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDHX_RS05020 (ACFDHX_05025) | comGC | 989688..990008 (-) | 321 | WP_107632995.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDHX_RS05025 (ACFDHX_05030) | comGB | 990020..991087 (-) | 1068 | WP_119635812.1 | competence type IV pilus assembly protein ComGB | - |
| ACFDHX_RS05030 (ACFDHX_05035) | comGA | 991056..992030 (-) | 975 | WP_257070565.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDHX_RS05035 (ACFDHX_05040) | - | 992086..992709 (-) | 624 | WP_107632997.1 | MBL fold metallo-hydrolase | - |
| ACFDHX_RS05040 (ACFDHX_05045) | - | 992724..993035 (-) | 312 | WP_039645576.1 | MTH1187 family thiamine-binding protein | - |
| ACFDHX_RS05045 (ACFDHX_05050) | - | 993037..994023 (-) | 987 | WP_039645573.1 | ROK family glucokinase | - |
| ACFDHX_RS05050 (ACFDHX_05055) | - | 994020..994223 (-) | 204 | WP_039645571.1 | YqgQ family protein | - |
| ACFDHX_RS05055 (ACFDHX_05060) | - | 994225..995664 (-) | 1440 | WP_305849953.1 | rhomboid family intramembrane serine protease | - |
| ACFDHX_RS05060 (ACFDHX_05065) | - | 995682..996221 (-) | 540 | WP_119635809.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ACFDHX_RS05065 (ACFDHX_05070) | rpmG | 996334..996498 (-) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37003.84 Da Isoelectric Point: 7.2046
>NTDB_id=1055585 ACFDHX_RS05030 WP_257070565.1 991056..992030(-) (comGA) [Staphylococcus hyicus strain SC392]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=1055585 ACFDHX_RS05030 WP_257070565.1 991056..992030(-) (comGA) [Staphylococcus hyicus strain SC392]
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |