Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCU15_RS12660 | Genome accession | NZ_CP170028 |
| Coordinates | 2882409..2882822 (+) | Length | 137 a.a. |
| NCBI ID | WP_016787825.1 | Uniprot ID | A0A7Z1S206 |
| Organism | Vibrio cyclitrophicus strain 10N.261.55.B9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2877409..2887822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCU15_RS12645 (BCU15_12645) | pdhR | 2879338..2880099 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCU15_RS12650 (BCU15_12650) | ampD | 2880581..2881180 (-) | 600 | WP_016783774.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCU15_RS12655 (BCU15_12655) | nadC | 2881264..2882154 (+) | 891 | WP_016783773.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCU15_RS12660 (BCU15_12660) | pilA | 2882409..2882822 (+) | 414 | WP_016787825.1 | pilin | Machinery gene |
| BCU15_RS12665 (BCU15_12665) | pilB | 2882822..2884507 (+) | 1686 | WP_016787826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCU15_RS12670 (BCU15_12670) | pilC | 2884522..2885751 (+) | 1230 | WP_016768204.1 | type II secretion system F family protein | Machinery gene |
| BCU15_RS12675 (BCU15_12675) | pilD | 2885818..2886687 (+) | 870 | WP_016768203.1 | prepilin peptidase | Machinery gene |
| BCU15_RS12680 (BCU15_12680) | coaE | 2886690..2887304 (+) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14087.81 Da Isoelectric Point: 4.9689
>NTDB_id=1054791 BCU15_RS12660 WP_016787825.1 2882409..2882822(+) (pilA) [Vibrio cyclitrophicus strain 10N.261.55.B9]
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
Nucleotide
Download Length: 414 bp
>NTDB_id=1054791 BCU15_RS12660 WP_016787825.1 2882409..2882822(+) (pilA) [Vibrio cyclitrophicus strain 10N.261.55.B9]
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
58.394 |
100 |
0.584 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae strain A1552 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae C6706 |
45.865 |
97.08 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
45.455 |
96.35 |
0.438 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.129 |
100 |
0.387 |
| pilA2 | Legionella pneumophila str. Paris |
40.323 |
90.511 |
0.365 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.323 |
90.511 |
0.365 |