Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCU67_RS04340 Genome accession   NZ_CP170019
Coordinates   865848..867077 (-) Length   409 a.a.
NCBI ID   WP_016791284.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.49.B11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860848..872077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU67_RS04300 (BCU67_04300) rpsP 860960..861208 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  BCU67_RS04305 (BCU67_04305) rimM 861233..861787 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCU67_RS04310 (BCU67_04310) trmD 861814..862554 (+) 741 WP_102277663.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCU67_RS04315 (BCU67_04315) rplS 862614..862967 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCU67_RS04320 (BCU67_04320) yacG 863249..863446 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCU67_RS04325 (BCU67_04325) zapD 863528..864268 (-) 741 WP_010435917.1 cell division protein ZapD -
  BCU67_RS04330 (BCU67_04330) coaE 864295..864909 (-) 615 WP_010435920.1 dephospho-CoA kinase -
  BCU67_RS04335 (BCU67_04335) pilD 864912..865781 (-) 870 WP_102277664.1 prepilin peptidase Machinery gene
  BCU67_RS04340 (BCU67_04340) pilC 865848..867077 (-) 1230 WP_016791284.1 type II secretion system F family protein Machinery gene
  BCU67_RS04345 (BCU67_04345) pilB 867093..868778 (-) 1686 WP_016790036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCU67_RS04350 (BCU67_04350) pilA 868779..869198 (-) 420 WP_016790035.1 pilin Machinery gene
  BCU67_RS04355 (BCU67_04355) nadC 869453..870343 (-) 891 WP_016790034.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCU67_RS04360 (BCU67_04360) ampD 870427..871025 (+) 599 Protein_757 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45093.98 Da        Isoelectric Point: 10.1000

>NTDB_id=1054652 BCU67_RS04340 WP_016791284.1 865848..867077(-) (pilC) [Vibrio cyclitrophicus strain 10N.286.49.B11]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQTKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054652 BCU67_RS04340 WP_016791284.1 865848..867077(-) (pilC) [Vibrio cyclitrophicus strain 10N.286.49.B11]
ATGAGTAGCAAGTCCAAACAGTCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCTGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTTACTGAATTAGAAGTACGGGAAAAGCTCAAAGAACAGCATATCCAGACTAAGAAAATCAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACCCATAGAGTCAAAGCCAAAGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCACTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTAGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCT
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.25

97.8

0.775
  pilC Vibrio campbellii strain DS40M4

73.039

99.756

0.729
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Legionella pneumophila strain ERS1305867

42.145

98.044

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.404

96.822

0.391
  pilG Neisseria gonorrhoeae MS11

39.85

97.555

0.389
  pilG Neisseria meningitidis 44/76-A

39.599

97.555

0.386

Multiple sequence alignment