Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCV20_RS02315 | Genome accession | NZ_CP170007 |
| Coordinates | 453787..454200 (-) | Length | 137 a.a. |
| NCBI ID | WP_016787825.1 | Uniprot ID | A0A7Z1S206 |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.F4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 448787..459200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV20_RS02295 (BCV20_02295) | coaE | 449305..449919 (-) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
| BCV20_RS02300 (BCV20_02300) | pilD | 449922..450791 (-) | 870 | WP_016768203.1 | prepilin peptidase | Machinery gene |
| BCV20_RS02305 (BCV20_02305) | pilC | 450858..452087 (-) | 1230 | WP_016768204.1 | type II secretion system F family protein | Machinery gene |
| BCV20_RS02310 (BCV20_02310) | pilB | 452102..453787 (-) | 1686 | WP_016787826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV20_RS02315 (BCV20_02315) | pilA | 453787..454200 (-) | 414 | WP_016787825.1 | pilin | Machinery gene |
| BCV20_RS02320 (BCV20_02320) | nadC | 454455..455345 (-) | 891 | WP_016783773.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV20_RS02325 (BCV20_02325) | ampD | 455429..456028 (+) | 600 | WP_016783774.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCV20_RS02330 (BCV20_02330) | pdhR | 456510..457271 (+) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14087.81 Da Isoelectric Point: 4.9689
>NTDB_id=1054373 BCV20_RS02315 WP_016787825.1 453787..454200(-) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
Nucleotide
Download Length: 414 bp
>NTDB_id=1054373 BCV20_RS02315 WP_016787825.1 453787..454200(-) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
58.394 |
100 |
0.584 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae strain A1552 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae C6706 |
45.865 |
97.08 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
45.455 |
96.35 |
0.438 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.129 |
100 |
0.387 |
| pilA2 | Legionella pneumophila str. Paris |
40.323 |
90.511 |
0.365 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.323 |
90.511 |
0.365 |