Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCV36_RS10835 | Genome accession | NZ_CP169997 |
| Coordinates | 2501623..2502075 (+) | Length | 150 a.a. |
| NCBI ID | WP_016792070.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.C4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2496623..2507075
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV36_RS10820 (BCV36_10820) | pdhR | 2498553..2499314 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCV36_RS10825 (BCV36_10825) | ampD | 2499796..2500395 (-) | 600 | WP_016783774.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCV36_RS10830 (BCV36_10830) | nadC | 2500479..2501369 (+) | 891 | WP_016792068.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV36_RS10835 (BCV36_10835) | pilA | 2501623..2502075 (+) | 453 | WP_016792070.1 | pilin | Machinery gene |
| BCV36_RS10840 (BCV36_10840) | pilB | 2502080..2503765 (+) | 1686 | WP_016794572.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV36_RS10845 (BCV36_10845) | pilC | 2503780..2505009 (+) | 1230 | WP_016794573.1 | type II secretion system F family protein | Machinery gene |
| BCV36_RS10850 (BCV36_10850) | pilD | 2505076..2505945 (+) | 870 | WP_102312963.1 | prepilin peptidase | Machinery gene |
| BCV36_RS10855 (BCV36_10855) | coaE | 2505948..2506562 (+) | 615 | WP_016794575.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15487.68 Da Isoelectric Point: 7.7799
>NTDB_id=1054192 BCV36_RS10835 WP_016792070.1 2501623..2502075(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MNNKSKRTNQKGFTLIELMIVVAVIGVLSAIAIPQYQKYVAKAEVAAALATMTGVKTNVEAYAVEYGAFPPAAQSAALGV
PANIPQGTIAFAPAQSSAGSIDFTFSSANVSSLLIASEFQLDRDSNGSWSCVASGAQAVSSDLLPKSCRP
MNNKSKRTNQKGFTLIELMIVVAVIGVLSAIAIPQYQKYVAKAEVAAALATMTGVKTNVEAYAVEYGAFPPAAQSAALGV
PANIPQGTIAFAPAQSSAGSIDFTFSSANVSSLLIASEFQLDRDSNGSWSCVASGAQAVSSDLLPKSCRP
Nucleotide
Download Length: 453 bp
>NTDB_id=1054192 BCV36_RS10835 WP_016792070.1 2501623..2502075(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGTTGATTGAATTGATGATTGTCGTGGCTGTGATTGGAGT
CCTTTCTGCGATTGCCATTCCTCAATATCAAAAATATGTAGCTAAGGCAGAAGTTGCTGCAGCCCTTGCAACTATGACAG
GTGTAAAAACGAATGTTGAAGCTTATGCAGTCGAATATGGAGCTTTCCCACCAGCAGCTCAATCTGCCGCTCTAGGTGTA
CCTGCAAACATTCCACAAGGTACAATTGCCTTTGCTCCTGCACAATCTTCTGCTGGTAGTATTGATTTTACATTTTCGTC
TGCGAATGTTAGCTCTCTTTTGATCGCTAGTGAGTTTCAATTGGACAGAGATAGTAACGGTTCATGGTCATGCGTAGCTT
CAGGCGCACAAGCTGTGTCAAGCGATTTGCTACCAAAAAGTTGTAGACCTTAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGTTGATTGAATTGATGATTGTCGTGGCTGTGATTGGAGT
CCTTTCTGCGATTGCCATTCCTCAATATCAAAAATATGTAGCTAAGGCAGAAGTTGCTGCAGCCCTTGCAACTATGACAG
GTGTAAAAACGAATGTTGAAGCTTATGCAGTCGAATATGGAGCTTTCCCACCAGCAGCTCAATCTGCCGCTCTAGGTGTA
CCTGCAAACATTCCACAAGGTACAATTGCCTTTGCTCCTGCACAATCTTCTGCTGGTAGTATTGATTTTACATTTTCGTC
TGCGAATGTTAGCTCTCTTTTGATCGCTAGTGAGTTTCAATTGGACAGAGATAGTAACGGTTCATGGTCATGCGTAGCTT
CAGGCGCACAAGCTGTGTCAAGCGATTTGCTACCAAAAAGTTGTAGACCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.667 |
100 |
0.487 |
| pilA | Vibrio cholerae strain A1552 |
48.667 |
100 |
0.487 |
| pilA | Vibrio cholerae C6706 |
48.667 |
100 |
0.487 |
| pilA | Acinetobacter baumannii strain A118 |
39.735 |
100 |
0.4 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
99.333 |
0.4 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.511 |
87.333 |
0.38 |