Detailed information NTG1054195

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCV36_RS10850
• Genome accession: NZ_CP169997
• Coordinates: 2505076..2505945 (+)
• Length: 289 a.a.
• NCBI ID: WP_102312963.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.55.C4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2500076..2510945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV36_RS10830 (BCV36_10830)	nadC	2500479..2501369 (+)	891	WP_016792068.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCV36_RS10835 (BCV36_10835)	pilA	2501623..2502075 (+)	453	WP_016792070.1	pilin	Machinery gene
BCV36_RS10840 (BCV36_10840)	pilB	2502080..2503765 (+)	1686	WP_016794572.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCV36_RS10845 (BCV36_10845)	pilC	2503780..2505009 (+)	1230	WP_016794573.1	type II secretion system F family protein	Machinery gene
BCV36_RS10850 (BCV36_10850)	pilD	2505076..2505945 (+)	870	WP_102312963.1	prepilin peptidase	Machinery gene
BCV36_RS10855 (BCV36_10855)	coaE	2505948..2506562 (+)	615	WP_016794575.1	dephospho-CoA kinase	-
BCV36_RS10860 (BCV36_10860)	zapD	2506589..2507329 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCV36_RS10865 (BCV36_10865)	yacG	2507411..2507608 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCV36_RS10870 (BCV36_10870)	rplS	2507880..2508233 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
BCV36_RS10875 (BCV36_10875)	trmD	2508293..2509033 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCV36_RS10880 (BCV36_10880)	rimM	2509060..2509614 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCV36_RS10885 (BCV36_10885)	rpsP	2509639..2509887 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32567.81 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054195 BCV36_RS10850 WP_102312963.1 2505076..2505945(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFPQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054195 BCV36_RS10850 WP_102312963.1 2505076..2505945(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTTCCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTGCTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443