Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABUS40_RS01655 Genome accession   NZ_CP169788
Coordinates   343051..344277 (-) Length   408 a.a.
NCBI ID   WP_000279217.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338051..349277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS01625 - 338082..339392 (+) 1311 WP_000753279.1 tetratricopeptide repeat protein -
  ABUS40_RS01630 - 339469..339795 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS40_RS01635 rlmB 339897..340646 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS40_RS01640 - 340682..341596 (+) 915 WP_000075018.1 DMT family transporter -
  ABUS40_RS01645 coaE 341593..342189 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS40_RS01650 pilD 342191..343051 (-) 861 WP_001152277.1 A24 family peptidase Machinery gene
  ABUS40_RS01655 pilC 343051..344277 (-) 1227 WP_000279217.1 type II secretion system F family protein Machinery gene
  ABUS40_RS01660 pilB 344307..346019 (-) 1713 WP_001274994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS40_RS01665 tpiA 346310..347104 (+) 795 WP_000016940.1 triose-phosphate isomerase -
  ABUS40_RS01670 secG 347117..347446 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS40_RS01690 rimP 348088..348612 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44925.40 Da        Isoelectric Point: 9.9566

>NTDB_id=1053017 ABUS40_RS01655 WP_000279217.1 343051..344277(-) (pilC) [Acinetobacter baumannii strain Hv766]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAAIA
AFLEAKKRSKKFRDSLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1053017 ABUS40_RS01655 WP_000279217.1 343051..344277(-) (pilC) [Acinetobacter baumannii strain Hv766]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCCGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGCCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATAGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.02

100

0.99
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment