Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPM6_RS04440 Genome accession   NZ_CP169570
Coordinates   875342..876592 (+) Length   416 a.a.
NCBI ID   WP_021493669.1    Uniprot ID   -
Organism   Bacillus velezensis strain CIMT3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 870342..881592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM6_RS04410 (ACEPM6_04410) yfmH 870425..871711 (+) 1287 WP_022553330.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPM6_RS04415 (ACEPM6_04415) ymfI 871771..872499 (+) 729 WP_014417800.1 elongation factor P 5-aminopentanone reductase -
  ACEPM6_RS04420 (ACEPM6_04420) - 872575..872832 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  ACEPM6_RS04425 (ACEPM6_04425) - 872960..873751 (+) 792 WP_003154149.1 YmfK family protein -
  ACEPM6_RS04430 (ACEPM6_04430) - 873770..874669 (+) 900 WP_014417801.1 RodZ domain-containing protein -
  ACEPM6_RS04435 (ACEPM6_04435) pgsA 874743..875324 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPM6_RS04440 (ACEPM6_04440) cinA 875342..876592 (+) 1251 WP_021493669.1 competence/damage-inducible protein A Machinery gene
  ACEPM6_RS04445 (ACEPM6_04445) recA 876763..877806 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  ACEPM6_RS04450 (ACEPM6_04450) - 877973..879154 (+) 1182 WP_017417799.1 serine hydrolase -
  ACEPM6_RS04455 (ACEPM6_04455) rny 879447..881006 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45058.41 Da        Isoelectric Point: 5.1492

>NTDB_id=1052313 ACEPM6_RS04440 WP_021493669.1 875342..876592(+) (cinA) [Bacillus velezensis strain CIMT3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
CPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1052313 ACEPM6_RS04440 WP_021493669.1 875342..876592(+) (cinA) [Bacillus velezensis strain CIMT3]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
TGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCCGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment