Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AKG93_RS13875 | Genome accession | NZ_CP169261 |
| Coordinates | 3056252..3056680 (+) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio harveyi strain VH2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3051252..3061680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKG93_RS13860 (AKG93_013860) | pdhR | 3053285..3054052 (-) | 768 | WP_009699648.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| AKG93_RS13865 (AKG93_013865) | ampD | 3054457..3055008 (-) | 552 | WP_053052949.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AKG93_RS13870 (AKG93_013870) | nadC | 3055101..3055988 (+) | 888 | WP_053052948.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AKG93_RS13875 (AKG93_013875) | pilA | 3056252..3056680 (+) | 429 | WP_009698754.1 | type IV pilin protein | Machinery gene |
| AKG93_RS13880 (AKG93_013880) | pilB | 3056680..3058365 (+) | 1686 | WP_009698755.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AKG93_RS13885 (AKG93_013885) | pilC | 3058399..3059622 (+) | 1224 | WP_005446256.1 | type II secretion system F family protein | Machinery gene |
| AKG93_RS13890 (AKG93_013890) | pilD | 3059695..3060564 (+) | 870 | WP_005446255.1 | prepilin peptidase | Machinery gene |
| AKG93_RS13895 (AKG93_013895) | coaE | 3060565..3061179 (+) | 615 | WP_053052946.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=1050037 AKG93_RS13875 WP_009698754.1 3056252..3056680(+) (pilA) [Vibrio harveyi strain VH2]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=1050037 AKG93_RS13875 WP_009698754.1 3056252..3056680(+) (pilA) [Vibrio harveyi strain VH2]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |