Detailed information NTG1050040

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AKG93_RS13890
• Genome accession: NZ_CP169261
• Coordinates: 3059695..3060564 (+)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio harveyi strain VH2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3054695..3065564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AKG93_RS13870 (AKG93_013870)	nadC	3055101..3055988 (+)	888	WP_053052948.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AKG93_RS13875 (AKG93_013875)	pilA	3056252..3056680 (+)	429	WP_009698754.1	type IV pilin protein	Machinery gene
AKG93_RS13880 (AKG93_013880)	pilB	3056680..3058365 (+)	1686	WP_009698755.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AKG93_RS13885 (AKG93_013885)	pilC	3058399..3059622 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
AKG93_RS13890 (AKG93_013890)	pilD	3059695..3060564 (+)	870	WP_005446255.1	prepilin peptidase	Machinery gene
AKG93_RS13895 (AKG93_013895)	coaE	3060565..3061179 (+)	615	WP_053052946.1	dephospho-CoA kinase	-
AKG93_RS13900 (AKG93_013900)	zapD	3061207..3061947 (+)	741	WP_009698757.1	cell division protein ZapD	-
AKG93_RS13905 (AKG93_013905)	yacG	3062010..3062204 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
AKG93_RS13910 (AKG93_013910)	rplS	3062571..3062924 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AKG93_RS13915 (AKG93_013915)	trmD	3062966..3063709 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AKG93_RS13920 (AKG93_013920)	rimM	3063737..3064285 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
AKG93_RS13925 (AKG93_013925)	rpsP	3064314..3064562 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=1050040 AKG93_RS13890 WP_005446255.1 3059695..3060564(+) (pilD) [Vibrio harveyi strain VH2]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1050040 AKG93_RS13890 WP_005446255.1 3059695..3060564(+) (pilD) [Vibrio harveyi strain VH2]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTTATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACTGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGTGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436