Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEJ41_RS10785 Genome accession   NZ_CP169056
Coordinates   2353481..2354740 (+) Length   419 a.a.
NCBI ID   WP_374012272.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2348481..2359740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS10765 (ACEJ41_10765) - 2349561..2351429 (-) 1869 WP_374012268.1 sulfatase-like hydrolase/transferase -
  ACEJ41_RS10770 (ACEJ41_10770) - 2351419..2352042 (-) 624 WP_374012269.1 class I SAM-dependent methyltransferase -
  ACEJ41_RS10775 (ACEJ41_10775) pilA 2352151..2352564 (-) 414 WP_374012270.1 pilin Machinery gene
  ACEJ41_RS10780 (ACEJ41_10780) pilA2 2352675..2353106 (-) 432 WP_374012271.1 pilin Machinery gene
  ACEJ41_RS10785 (ACEJ41_10785) pilC 2353481..2354740 (+) 1260 WP_374012272.1 type II secretion system F family protein Machinery gene
  ACEJ41_RS10790 (ACEJ41_10790) - 2354757..2355623 (+) 867 WP_374012273.1 A24 family peptidase -
  ACEJ41_RS10795 (ACEJ41_10795) - 2355819..2356100 (+) 282 WP_374012274.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACEJ41_RS10800 (ACEJ41_10800) - 2356108..2356401 (+) 294 WP_374012275.1 HigA family addiction module antitoxin -
  ACEJ41_RS10805 (ACEJ41_10805) - 2356770..2357687 (+) 918 WP_374012276.1 histone deacetylase family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45826.07 Da        Isoelectric Point: 10.0746

>NTDB_id=1049607 ACEJ41_RS10785 WP_374012272.1 2353481..2354740(+) (pilC) [Pseudoxanthomonas koreensis strain TDY-1]
MSATRSAVKKTAPIARDTNQLVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPRVVKAKPKPLFGAAGKVISPK
DIAFFSRQMATMMKSGVPIVSSLEIIGSGHKNPRMKKMVDQIRTDIEGGSSMHEAISQHPVQFDELFRNLVRAGEGAGVL
ETVLDTIANYKENIEALKGKIKKALFYPAMTIAVAILVSAILLIFVVPQFEATFRDFGADLPAFTKLIVAASDFMVGYWW
VILILIAGSFFGFFYFYKRSAAMRHTLDKLVLKVPVVGEIMHNSAIARFARTTAVTFKAGVPLVEALESVAGATGSSVYE
KAVYRIRDDVAVGYPVNMAMKQTNLFPHMVIMMTAIGEEAGALDTMLFKVAEYYEQEVNNSVDALASLIEPMIMVVIGGL
VGAMVIGMYLPIFKLAATV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1049607 ACEJ41_RS10785 WP_374012272.1 2353481..2354740(+) (pilC) [Pseudoxanthomonas koreensis strain TDY-1]
ATGTCAGCGACCCGTAGCGCCGTTAAGAAGACCGCACCCATCGCCCGCGACACGAACCAACTGGTTCCGTTCGTGTGGGA
GGGCACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCC
GCCAGGGCATCACCCCCCGGGTGGTCAAAGCCAAGCCCAAGCCGCTGTTCGGCGCGGCCGGCAAGGTCATCTCGCCCAAG
GACATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCGGGCGTGCCCATCGTCTCCTCGCTGGAGATCATCGG
CAGCGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATCCGCACCGACATCGAGGGCGGCTCATCCATGCACG
AGGCCATCAGCCAGCACCCGGTGCAGTTTGACGAGCTGTTCCGCAACCTGGTGCGCGCCGGCGAAGGCGCCGGCGTGCTG
GAAACGGTGCTGGACACCATTGCCAACTACAAGGAAAACATCGAGGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTA
CCCGGCGATGACCATTGCAGTGGCCATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAGGCCACCT
TCCGCGATTTCGGGGCGGACCTGCCGGCCTTCACCAAGCTGATCGTGGCCGCCTCCGACTTCATGGTCGGCTACTGGTGG
GTCATCCTGATCCTGATTGCCGGTTCGTTCTTCGGCTTCTTCTACTTCTACAAGCGCTCGGCCGCGATGCGGCACACGCT
GGACAAGCTGGTGCTGAAGGTGCCGGTGGTCGGCGAGATCATGCACAACAGCGCCATCGCCCGCTTCGCCCGCACCACGG
CGGTGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGAATCGGTGGCCGGCGCCACCGGCAGCAGCGTGTACGAA
AAGGCCGTGTACCGCATCCGCGACGACGTGGCGGTGGGCTACCCGGTGAACATGGCGATGAAGCAGACCAACCTGTTTCC
GCACATGGTGATCATGATGACCGCCATCGGCGAGGAGGCCGGCGCCCTGGACACCATGCTGTTCAAGGTGGCCGAGTACT
ACGAGCAGGAAGTGAACAACTCGGTGGACGCACTGGCCAGCCTGATCGAACCGATGATCATGGTGGTGATCGGCGGCCTG
GTGGGTGCAATGGTGATCGGCATGTACCTGCCCATCTTCAAGCTGGCCGCAACCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

50.99

96.42

0.492
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.511

0.489
  pilC Acinetobacter baumannii D1279779

50.995

95.943

0.489
  pilC Acinetobacter baylyi ADP1

49.754

96.897

0.482
  pilG Neisseria gonorrhoeae MS11

41.457

94.988

0.394
  pilG Neisseria meningitidis 44/76-A

40.955

94.988

0.389
  pilC Vibrio cholerae strain A1552

38.025

96.659

0.368
  pilC Vibrio campbellii strain DS40M4

37.192

96.897

0.36

Multiple sequence alignment