Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACEUKD_RS15165 Genome accession   NZ_CP169050
Coordinates   3235226..3236335 (-) Length   369 a.a.
NCBI ID   WP_145533255.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3230226..3241335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS15135 (ACEUKD_15135) hemF 3230687..3231604 (-) 918 WP_065645011.1 oxygen-dependent coproporphyrinogen oxidase -
  ACEUKD_RS15140 (ACEUKD_15140) - 3231652..3232209 (-) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  ACEUKD_RS15145 (ACEUKD_15145) purE 3232409..3232894 (+) 486 WP_134648207.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACEUKD_RS15150 (ACEUKD_15150) - 3232899..3234026 (+) 1128 WP_237312695.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACEUKD_RS15155 (ACEUKD_15155) - 3234096..3234665 (-) 570 WP_005386647.1 type I DNA topoisomerase -
  ACEUKD_RS15160 (ACEUKD_15160) - 3234744..3235223 (-) 480 WP_005379074.1 DUF494 family protein -
  ACEUKD_RS15165 (ACEUKD_15165) dprA 3235226..3236335 (-) 1110 WP_145533255.1 DNA-processing protein DprA Machinery gene
  ACEUKD_RS15170 (ACEUKD_15170) - 3236319..3237413 (-) 1095 WP_237309817.1 LysM peptidoglycan-binding domain-containing protein -
  ACEUKD_RS15175 (ACEUKD_15175) def 3237552..3238070 (+) 519 WP_005379068.1 peptide deformylase -
  ACEUKD_RS15180 (ACEUKD_15180) fmt 3238104..3239051 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  ACEUKD_RS15185 (ACEUKD_15185) rsmB 3239132..3240415 (+) 1284 WP_085344703.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40147.79 Da        Isoelectric Point: 6.5736

>NTDB_id=1049569 ACEUKD_RS15165 WP_145533255.1 3235226..3236335(-) (dprA) [Vibrio diabolicus strain SF42]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWFEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVEGSPTFLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1049569 ACEUKD_RS15165 WP_145533255.1 3235226..3236335(-) (dprA) [Vibrio diabolicus strain SF42]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGTTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCTCCGTTGTTATTTGTTGAGGG
GAGTCCCACCTTTTTATCGCAACCACAAATTGCCATGGTGGGTAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAC
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACTGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.044

97.832

0.431
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

36.962

100

0.396
  dprA Neisseria meningitidis MC58

36.962

100

0.396
  dprA Neisseria gonorrhoeae MS11

35.369

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.115

100

0.374

Multiple sequence alignment