Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB2R09_RS07120 Genome accession   NZ_CP168906
Coordinates   1408750..1409994 (+) Length   414 a.a.
NCBI ID   WP_171424305.1    Uniprot ID   -
Organism   Listeria monocytogenes strain N23-0854     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1403750..1414994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2R09_RS07100 (AB2R09_07095) yfmH 1404924..1406210 (+) 1287 WP_070008152.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB2R09_RS07105 (AB2R09_07100) ymfI 1406302..1407033 (+) 732 WP_003727459.1 elongation factor P 5-aminopentanone reductase -
  AB2R09_RS07110 (AB2R09_07105) - 1407084..1408013 (+) 930 WP_003727458.1 RodZ family helix-turn-helix domain-containing protein -
  AB2R09_RS07115 (AB2R09_07110) pgsA 1408104..1408682 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB2R09_RS07120 (AB2R09_07115) cinA 1408750..1409994 (+) 1245 WP_171424305.1 competence/damage-inducible protein A Machinery gene
  AB2R09_RS07125 (AB2R09_07120) recA 1410267..1411313 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  AB2R09_RS07130 (AB2R09_07125) rny 1411614..1413176 (+) 1563 WP_003721904.1 ribonuclease Y -
  AB2R09_RS07135 (AB2R09_07130) - 1413291..1413788 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  AB2R09_RS07140 (AB2R09_07135) - 1413794..1414597 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  AB2R09_RS07145 (AB2R09_07140) - 1414614..1414976 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45689.85 Da        Isoelectric Point: 4.6592

>NTDB_id=1048373 AB2R09_RS07120 WP_171424305.1 1408750..1409994(+) (cinA) [Listeria monocytogenes strain N23-0854]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAILLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1048373 AB2R09_RS07120 WP_171424305.1 1408750..1409994(+) (cinA) [Listeria monocytogenes strain N23-0854]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCTGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
TTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.589

98.792

0.51
  cinA Streptococcus pneumoniae TIGR4

49.282

100

0.498
  cinA Streptococcus mitis SK321

49.043

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.565

100

0.49
  cinA Streptococcus pneumoniae R6

48.565

100

0.49
  cinA Streptococcus pneumoniae D39

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.301

99.517

0.481
  cinA Streptococcus suis isolate S10

38.592

99.517

0.384

Multiple sequence alignment