Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB2Q16_RS07185 Genome accession   NZ_CP168825
Coordinates   1434462..1435706 (+) Length   414 a.a.
NCBI ID   WP_060587731.1    Uniprot ID   A0A3T1JZY6
Organism   Listeria monocytogenes strain N23-1936     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429462..1440706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2Q16_RS07165 (AB2Q16_07160) yfmH 1430636..1431922 (+) 1287 WP_003732282.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB2Q16_RS07170 (AB2Q16_07165) ymfI 1432014..1432745 (+) 732 WP_069007842.1 elongation factor P 5-aminopentanone reductase -
  AB2Q16_RS07175 (AB2Q16_07170) - 1432796..1433725 (+) 930 WP_003732284.1 RodZ family helix-turn-helix domain-containing protein -
  AB2Q16_RS07180 (AB2Q16_07175) pgsA 1433815..1434393 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB2Q16_RS07185 (AB2Q16_07180) cinA 1434462..1435706 (+) 1245 WP_060587731.1 competence/damage-inducible protein A Machinery gene
  AB2Q16_RS07190 (AB2Q16_07185) recA 1435979..1437025 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  AB2Q16_RS07195 (AB2Q16_07190) rny 1437326..1438888 (+) 1563 WP_003721904.1 ribonuclease Y -
  AB2Q16_RS07200 (AB2Q16_07195) - 1439002..1439499 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  AB2Q16_RS07205 (AB2Q16_07200) - 1439505..1440308 (+) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  AB2Q16_RS07210 (AB2Q16_07205) - 1440325..1440687 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45612.83 Da        Isoelectric Point: 4.8669

>NTDB_id=1046087 AB2Q16_RS07185 WP_060587731.1 1434462..1435706(+) (cinA) [Listeria monocytogenes strain N23-1936]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILILTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1046087 AB2Q16_RS07185 WP_060587731.1 1434462..1435706(+) (cinA) [Listeria monocytogenes strain N23-1936]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTAACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAATAAATTACAAGCGGTTATTATTAAAGATTCTGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T1JZY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.403

100

0.5
  cinA Bacillus subtilis subsp. subtilis str. 168

50.367

98.792

0.498
  cinA Streptococcus pneumoniae TIGR4

48.81

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.687

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.493
  cinA Streptococcus pneumoniae R6

48.571

100

0.493
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae D39

48.333

100

0.49
  cinA Streptococcus suis isolate S10

39.078

99.517

0.389

Multiple sequence alignment