Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPSR_RS05255 Genome accession   NZ_CP168714
Coordinates   1025924..1027162 (-) Length   412 a.a.
NCBI ID   WP_395318783.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3912     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1020924..1032162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSR_RS05245 - 1023328..1024134 (-) 807 WP_395318781.1 TIGR00282 family metallophosphoesterase -
  ACEPSR_RS05250 rny 1024221..1025780 (-) 1560 WP_395378821.1 ribonuclease Y -
  ACEPSR_RS05255 cinA 1025924..1027162 (-) 1239 WP_395318783.1 competence/damage-inducible protein A Machinery gene
  ACEPSR_RS05260 pgsA 1027181..1027768 (-) 588 WP_395318785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPSR_RS05265 - 1027843..1028739 (-) 897 WP_395318787.1 helix-turn-helix domain-containing protein -
  ACEPSR_RS05270 yfmH 1028810..1030093 (-) 1284 WP_395318789.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPSR_RS05275 yfmF 1030083..1031345 (-) 1263 WP_395318791.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44627.06 Da        Isoelectric Point: 4.6129

>NTDB_id=1045181 ACEPSR_RS05255 WP_395318783.1 1025924..1027162(-) (cinA) [Fructilactobacillus frigidiflavus strain FUA3912]
MNAEIITVGTEILLGEIVDTSAPFIARRLANLGIDVYFEDTVGDNYARLEATISLAESRSDLVVLTGGLGPTEDDITKIS
LAQHLGLDLETDPKALKTINDFYATYALGKPSNADMMAKYIEGAEILPNEKGFAVGMFLKTDACDYLVLPGPPVEMQAMF
TNFAMPKLAELTNGNSLIDSRVLRFFGIGETELEKDLKPLIDKQTNPTLATYAKRNEVTLRITASGSTKAEIKKLLDDME
KQVLAIVGQYFYGYGDNNSLEKVVVNLLKQKGLTVTAAESLTSGMFQSRLGNVAGASEVFPGGFVTYSAKAKEQLLTIPE
TLINEYGVVSAETAEYMAKNAKAEMKTDVGVSFTGVAGPDSLEGHPAGFFWVGLALPDGKVITKSVNFAKARNEVRDYAT
KTGFKLIYDNLK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1045181 ACEPSR_RS05255 WP_395318783.1 1025924..1027162(-) (cinA) [Fructilactobacillus frigidiflavus strain FUA3912]
ATGAATGCTGAAATAATTACGGTAGGAACTGAAATTCTACTGGGAGAAATTGTTGATACTAGTGCACCTTTCATTGCACG
TCGGTTAGCGAACTTAGGCATCGATGTCTATTTTGAAGATACGGTTGGCGATAACTATGCACGCCTAGAAGCTACCATTA
GCTTAGCTGAGAGTCGGAGTGATTTAGTCGTTTTAACTGGTGGACTTGGACCAACAGAAGATGACATTACTAAGATTTCT
TTGGCGCAACACTTAGGCCTAGATTTAGAAACTGATCCAAAGGCATTGAAGACAATTAACGACTTTTATGCGACCTATGC
GTTAGGCAAGCCTAGTAATGCGGATATGATGGCTAAATACATCGAGGGTGCTGAAATCCTACCAAACGAAAAAGGTTTTG
CTGTGGGAATGTTTTTAAAAACGGACGCTTGTGATTATTTAGTATTGCCTGGACCTCCAGTTGAAATGCAAGCCATGTTT
ACTAATTTTGCTATGCCAAAATTAGCAGAATTAACGAATGGAAATTCATTAATTGACTCACGGGTACTACGTTTCTTTGG
AATTGGGGAAACGGAATTAGAAAAAGATTTGAAACCGTTAATTGATAAGCAAACTAATCCAACCTTAGCCACCTATGCTA
AACGTAATGAAGTAACTTTACGAATTACTGCGAGTGGGTCAACCAAGGCTGAAATCAAAAAATTACTGGATGATATGGAA
AAACAAGTCTTAGCAATTGTTGGACAGTATTTTTATGGTTATGGGGATAATAATTCCCTTGAAAAAGTGGTCGTTAATTT
ATTGAAACAAAAAGGATTAACGGTAACAGCTGCGGAATCATTAACGAGTGGGATGTTCCAAAGTCGCCTTGGAAACGTTG
CTGGAGCTTCAGAGGTCTTTCCCGGTGGTTTTGTGACTTATTCTGCCAAAGCTAAAGAACAGCTCTTAACCATTCCAGAA
ACTTTGATTAATGAGTATGGGGTAGTTTCAGCTGAAACTGCCGAATACATGGCTAAAAACGCTAAAGCTGAGATGAAAAC
GGACGTTGGTGTTTCCTTTACTGGAGTCGCTGGACCTGATAGCCTTGAAGGCCATCCAGCTGGATTTTTCTGGGTGGGGT
TAGCTTTACCAGACGGAAAAGTAATTACTAAAAGCGTGAACTTTGCCAAAGCTCGTAATGAAGTTCGGGATTATGCTACG
AAGACTGGTTTCAAGTTAATTTATGATAATTTAAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.936

100

0.502
  cinA Streptococcus mitis NCTC 12261

48.7

100

0.5
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.485
  cinA Streptococcus pneumoniae R6

47.506

100

0.485
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.485
  cinA Streptococcus pneumoniae D39

47.268

100

0.483
  cinA Streptococcus mutans UA159

46.265

100

0.466
  cinA Bacillus subtilis subsp. subtilis str. 168

42.963

98.301

0.422
  cinA Streptococcus suis isolate S10

39.267

92.718

0.364

Multiple sequence alignment