Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPST_RS00740 Genome accession   NZ_CP168704
Coordinates   71012..72262 (-) Length   416 a.a.
NCBI ID   WP_204121402.1    Uniprot ID   -
Organism   Levilactobacillus sp. FUA 3915     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66012..77262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPST_RS00725 - 66687..67481 (-) 795 WP_125765742.1 TIGR00282 family metallophosphoesterase -
  ACEPST_RS00730 rny 67922..69481 (-) 1560 WP_395390456.1 ribonuclease Y -
  ACEPST_RS00735 recA 69784..70920 (-) 1137 WP_395390457.1 recombinase RecA Machinery gene
  ACEPST_RS00740 cinA 71012..72262 (-) 1251 WP_204121402.1 competence/damage-inducible protein A Machinery gene
  ACEPST_RS00745 pgsA 73139..73726 (-) 588 WP_203646108.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPST_RS00750 - 73798..74742 (-) 945 WP_204121404.1 helix-turn-helix domain-containing protein -
  ACEPST_RS00755 yfmH 74855..76141 (-) 1287 WP_374706463.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44736.76 Da        Isoelectric Point: 4.9488

>NTDB_id=1045099 ACEPST_RS00740 WP_204121402.1 71012..72262(-) (cinA) [Levilactobacillus sp. FUA 3915]
MQAEIIAVGTEILLGQIVDTNSAFIARELAEAGIEVYYHSLVGDNADRLTTVVNQARSRSDLVIISGGLGPTKDDLTKQT
VAHLLGVKLVEEPEAMVKIREHFATAERPMTPNNRLQALYPEGSQPLKNRTGMAVGAFYQDPNAADIMLLPGPPSEAEPM
FAEQAVPLLKATYHRDEYLVSRVLRFFGIGEGQLVTLLSDLIDGQTNPTIAPYAKVNEVTLRLTAQAKDEAAGNQLLDDM
TATIKDRVGDYLYGYGDDNSLAAVVVNEMIDRHLTITGAESLTAGKFQSTLGDVPGVSAIFPGGFVTYANSAKHDLLGIP
QSIIAEDGVVSAATAQQMAERSRALLDTDFSLSFTGVAGPDALEGHPAGTVWLGLAQRGHEPRARLVHLTGTRAAIRERS
VMTGLDWLRRVLHGSK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1045099 ACEPST_RS00740 WP_204121402.1 71012..72262(-) (cinA) [Levilactobacillus sp. FUA 3915]
ATGCAAGCAGAAATCATTGCCGTCGGAACCGAAATTCTATTGGGACAAATCGTTGATACGAATTCGGCCTTTATTGCCCG
TGAATTGGCTGAGGCCGGTATCGAAGTTTATTACCATTCATTGGTTGGCGATAACGCTGACCGGCTGACGACAGTGGTGA
ATCAGGCCCGTTCGCGGAGCGACTTGGTGATCATCAGTGGGGGACTTGGACCGACGAAAGATGATCTGACAAAACAGACC
GTTGCCCACTTGTTGGGGGTGAAGCTGGTTGAGGAGCCTGAAGCGATGGTCAAAATTCGCGAGCACTTTGCCACGGCAGA
GCGGCCTATGACCCCTAACAATCGCTTACAGGCACTTTATCCTGAAGGAAGCCAACCACTCAAGAACCGGACCGGGATGG
CTGTCGGGGCCTTTTATCAGGACCCTAACGCGGCTGACATCATGCTATTGCCCGGACCACCTAGTGAAGCGGAGCCCATG
TTTGCTGAACAGGCGGTGCCTTTGCTGAAGGCGACCTATCATCGGGATGAATACCTGGTATCGCGGGTCTTGCGGTTCTT
TGGCATCGGCGAGGGGCAACTGGTGACCCTGCTGAGTGACCTGATTGATGGGCAAACGAACCCGACGATTGCACCGTATG
CTAAAGTAAATGAGGTCACGCTGCGGTTGACGGCCCAGGCAAAGGATGAGGCTGCTGGTAATCAGCTGTTGGATGACATG
ACGGCGACTATTAAGGACCGTGTGGGCGATTATCTCTATGGCTATGGGGATGACAACAGTTTGGCAGCGGTCGTGGTCAA
CGAAATGATTGACCGCCACCTGACGATTACGGGCGCTGAAAGTTTAACGGCCGGGAAGTTCCAGAGTACACTGGGGGACG
TCCCCGGGGTTTCGGCCATCTTTCCGGGTGGCTTCGTGACCTATGCCAATTCAGCTAAGCATGACCTGTTAGGGATTCCG
CAGTCCATCATCGCTGAGGATGGGGTCGTTAGTGCGGCCACGGCTCAGCAAATGGCGGAGCGTTCCCGGGCGTTATTGGA
TACCGACTTCTCGCTGAGCTTTACCGGTGTGGCGGGGCCAGATGCCCTGGAAGGCCACCCTGCTGGGACCGTTTGGTTGG
GTCTGGCGCAACGCGGACATGAACCGCGGGCCCGTCTGGTTCATTTGACGGGGACTCGAGCGGCCATTCGTGAGCGGTCC
GTGATGACCGGTTTGGATTGGCTCCGCCGCGTCTTACACGGGTCAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.537

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.3

100

0.522
  cinA Streptococcus pneumoniae Rx1

50.472

100

0.514
  cinA Streptococcus pneumoniae TIGR4

50.472

100

0.514
  cinA Streptococcus pneumoniae R6

50.472

100

0.514
  cinA Streptococcus pneumoniae D39

50.236

100

0.512
  cinA Streptococcus mutans UA159

49.403

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

48.175

98.798

0.476
  cinA Streptococcus suis isolate S10

40.865

100

0.409

Multiple sequence alignment