Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPSQ_RS04300 Genome accession   NZ_CP168685
Coordinates   879072..880322 (+) Length   416 a.a.
NCBI ID   WP_395321105.1    Uniprot ID   -
Organism   Levilactobacillus parabrevis strain FUA 30083     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874072..885322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSQ_RS04280 yfmF 874118..875398 (+) 1281 WP_395321108.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACEPSQ_RS04285 yfmH 875373..876677 (+) 1305 WP_395345563.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPSQ_RS04290 - 876790..877731 (+) 942 WP_395321106.1 RodZ domain-containing protein -
  ACEPSQ_RS04295 pgsA 877802..878389 (+) 588 WP_020088357.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPSQ_RS04300 cinA 879072..880322 (+) 1251 WP_395321105.1 competence/damage-inducible protein A Machinery gene
  ACEPSQ_RS04305 recA 880412..881545 (+) 1134 WP_395345568.1 recombinase RecA Machinery gene
  ACEPSQ_RS04310 rny 881770..883329 (+) 1560 WP_125701175.1 ribonuclease Y -
  ACEPSQ_RS04315 - 883618..884415 (+) 798 WP_395321103.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44896.86 Da        Isoelectric Point: 4.9203

>NTDB_id=1044950 ACEPSQ_RS04300 WP_395321105.1 879072..880322(+) (cinA) [Levilactobacillus parabrevis strain FUA 30083]
MQAEIIAVGTEILLGQVVDTNSAYIAQGLADAGIEVYYHSLVGDNADRLTTVVNQARSRSDLVVISGGLGPTKDDLTKQT
VAQLLGVKLVEDAPAMAKIQRHFATTGQKLTPNNRLQALYLAGSTLLKNSTGMAVGSFYRDPHGADLMLLPGPPSELEPM
FENEALPRLEQAYRRQEFLVSRVLRFFGIGEAELVTQLADLIDEQTNPTIAPYAKVNEVTLRLTAAASSTAAGNQLLDDM
TATIQNRVGDFLYGYGDDNSLAQVVVNTLIDRHLTITAAESLTAGKFQSTLGDVPGVSAVFPGGFVTYANDAKRDLLGIP
QQVIDTDGVVSEHTAQEMAERSREKLNTDFALSFTGVAGPDALEGQPAGTVWLGLAQRNQAPQAKLVHLTGNRAKVRERA
VMQALDWLRRILRDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1044950 ACEPSQ_RS04300 WP_395321105.1 879072..880322(+) (cinA) [Levilactobacillus parabrevis strain FUA 30083]
ATGCAAGCGGAAATTATTGCGGTCGGGACGGAAATCTTGCTGGGGCAAGTCGTGGATACGAACTCGGCCTACATTGCGCA
GGGATTGGCGGATGCCGGGATCGAAGTCTACTACCATTCTCTCGTTGGGGACAACGCCGATCGGCTAACGACAGTGGTCA
ATCAGGCACGGTCGCGTAGTGATCTGGTGGTCATCAGTGGGGGCCTCGGACCGACCAAAGATGATTTGACGAAACAGACG
GTGGCTCAACTATTAGGGGTTAAATTAGTTGAAGACGCACCAGCCATGGCCAAGATTCAACGGCACTTTGCGACGACTGG
ACAGAAATTGACCCCTAACAATCGCTTGCAGGCACTTTACTTAGCTGGCAGCACACTACTCAAGAACAGCACGGGGATGG
CTGTAGGGTCCTTCTACCGCGATCCTCATGGGGCAGACTTGATGCTGCTACCCGGACCACCCAGCGAATTGGAACCCATG
TTTGAAAATGAGGCGTTACCGCGGCTGGAACAGGCTTATCGGCGCCAAGAATTCTTAGTATCACGCGTCCTGCGGTTCTT
CGGTATCGGTGAAGCCGAGTTGGTGACGCAACTGGCCGATTTGATCGACGAACAGACTAATCCAACGATTGCGCCGTACG
CTAAGGTCAATGAGGTTACGTTGCGTTTGACGGCCGCAGCATCGTCCACGGCGGCTGGTAATCAGCTGTTGGATGACATG
ACGGCAACGATTCAGAATCGCGTGGGGGACTTCCTTTATGGTTATGGCGATGACAATAGTCTGGCACAGGTCGTGGTGAA
CACCTTGATTGATCGACACCTGACGATTACGGCGGCGGAGAGTTTGACCGCTGGTAAGTTTCAGAGCACCTTGGGGGATG
TCCCCGGGGTCTCGGCCGTCTTTCCAGGTGGTTTTGTAACCTACGCCAATGATGCTAAACGTGACTTGCTAGGTATTCCG
CAGCAGGTTATCGACACAGACGGTGTGGTTAGCGAACACACGGCCCAGGAGATGGCGGAACGCTCTCGTGAGAAGTTGAA
TACGGACTTTGCGCTTAGCTTTACCGGTGTCGCGGGTCCGGATGCTCTTGAAGGTCAGCCCGCCGGGACGGTGTGGTTGG
GGTTGGCGCAACGCAACCAGGCCCCACAAGCCAAGCTGGTGCACCTGACCGGTAATCGTGCGAAGGTTCGGGAGCGAGCT
GTGATGCAAGCACTGGATTGGTTACGACGGATTCTACGGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.544

100

0.522
  cinA Streptococcus mitis NCTC 12261

51.069

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.594

100

0.512
  cinA Streptococcus pneumoniae TIGR4

50.594

100

0.512
  cinA Streptococcus pneumoniae R6

50.594

100

0.512
  cinA Streptococcus mutans UA159

50.476

100

0.51
  cinA Streptococcus pneumoniae D39

50.356

100

0.51
  cinA Bacillus subtilis subsp. subtilis str. 168

46.135

99.519

0.459
  cinA Streptococcus suis isolate S10

42.308

100

0.423

Multiple sequence alignment