Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QOR45_RS01415 Genome accession   NZ_OX460935
Coordinates   236840..237109 (+) Length   89 a.a.
NCBI ID   WP_000962019.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-286     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231840..242109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR45_RS01380 - 232452..232844 (+) 393 WP_000889196.1 DUF1366 domain-containing protein -
  QOR45_RS01385 - 232867..232995 (+) 129 WP_000973385.1 hypothetical protein -
  QOR45_RS01390 - 233004..233306 (+) 303 WP_001017826.1 hypothetical protein -
  QOR45_RS01395 - 233299..233526 (+) 228 WP_000609111.1 phage holin -
  QOR45_RS01400 - 233652..234995 (+) 1344 WP_283572043.1 GH25 family lysozyme -
  QOR45_RS01405 - 235202..236326 (+) 1125 WP_001207841.1 Fic family protein -
  QOR45_RS01410 - 236480..236680 (+) 201 WP_025197901.1 CsbD family protein -
  QOR45_RS01415 comGC 236840..237109 (+) 270 WP_000962019.1 competence type IV pilus major pilin ComGC Machinery gene
  QOR45_RS01420 comGD 237084..237497 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR45_RS01425 comGE 237469..237768 (+) 300 WP_001872488.1 competence type IV pilus minor pilin ComGE Machinery gene
  QOR45_RS01430 comGF 237722..238183 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  QOR45_RS01435 comGG 238161..238532 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG Machinery gene
  QOR45_RS01440 comGH 238647..239621 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  QOR45_RS01445 - 239653..240846 (+) 1194 WP_000047534.1 acetate kinase -
  QOR45_RS01450 - 240974..241166 (+) 193 Protein_233 helix-turn-helix transcriptional regulator -
  QOR45_RS01455 - 241145..241411 (+) 267 Protein_234 hypothetical protein -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 9783.29 Da        Isoelectric Point: 9.4004

>NTDB_id=1043310 QOR45_RS01415 WP_000962019.1 236840..237109(+) (comGC) [Streptococcus agalactiae isolate MRI Z2-286]
MLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQETGRKASLSTLKSGGYITEKQEKAYLDYYKDS
SNGSQKISS

Nucleotide


Download         Length: 270 bp        

>NTDB_id=1043310 QOR45_RS01415 WP_000962019.1 236840..237109(+) (comGC) [Streptococcus agalactiae isolate MRI Z2-286]
ATGTTAGTTGTTTTGATCATTATTTCGGTCTTGTTGTTATTGTTTGTACCCAATTTATCAAAACAAAAGGAAAGTGTCAC
AAGAACTGGAAATGCCGCTGTTGTCAAGGTTGTAGAAAGTCAAGCCGAACTTTTTGAACTGCAAGAAACAGGTAGAAAAG
CTAGTTTATCCACTCTAAAATCTGGAGGATATATTACTGAAAAGCAAGAAAAAGCCTATTTAGATTATTATAAAGACAGT
TCCAATGGTTCTCAGAAAATTTCAAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Streptococcus gordonii str. Challis substr. CH1

60.674

100

0.607
  comGC/cglC Streptococcus pneumoniae Rx1

58.427

100

0.584
  comGC/cglC Streptococcus pneumoniae D39

58.427

100

0.584
  comGC/cglC Streptococcus pneumoniae R6

58.427

100

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

58.427

100

0.584
  comGC Streptococcus suis isolate S10

64.384

82.022

0.528
  comGC/cglC Streptococcus mitis NCTC 12261

56

84.27

0.472
  comGC/cglC Streptococcus mitis SK321

54.667

84.27

0.461
  comGC Lactococcus lactis subsp. cremoris KW2

59.42

77.528

0.461
  comGC Streptococcus mutans UA140

49.315

82.022

0.404
  comGC Streptococcus mutans UA159

49.315

82.022

0.404